1T3Z

Formyl-CoA Tranferase mutant Asp169 to Ser


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 

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This is version 1.3 of the entry. See complete history


Literature

Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes

Jonsson, S.Ricagno, S.Lindqvist, Y.Richards, N.G.

(2004) J Biol Chem 279: 36003-36012

  • DOI: 10.1074/jbc.M404873200
  • Primary Citation of Related Structures:  
    1VGR, 1VGQ, 1T4C, 1T3Z

  • PubMed Abstract: 
  • Oxalobacter formigenes is an obligate anaerobe that colonizes the human gastrointestinal tract and employs oxalate breakdown to generate ATP in a novel process involving the interplay of two coupled enzymes and a membrane-bound oxalate:formate antiporter ...

    Oxalobacter formigenes is an obligate anaerobe that colonizes the human gastrointestinal tract and employs oxalate breakdown to generate ATP in a novel process involving the interplay of two coupled enzymes and a membrane-bound oxalate:formate antiporter. Formyl-CoA transferase is a critical enzyme in oxalate-dependent ATP synthesis and is the first Class III CoA-transferase for which a high resolution, three-dimensional structure has been determined (Ricagno, S., Jonsson, S., Richards, N., and Lindqvist, Y. (2003) EMBO J. 22, 3210-3219). We now report the first detailed kinetic characterizations of recombinant, wild type formyl-CoA transferase and a number of site-specific mutants, which suggest that catalysis proceeds via a series of anhydride intermediates. Further evidence for this mechanistic proposal is provided by the x-ray crystallographic observation of an acylenzyme intermediate that is formed when formyl-CoA transferase is incubated with oxalyl-CoA. The catalytic mechanism of formyl-CoA transferase is therefore established and is almost certainly employed by all other members of the Class III CoA-transferase family.


    Organizational Affiliation

    Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Formyl-coenzyme A transferaseA, B427Oxalobacter formigenesMutation(s): 1 
Gene Names: frc
EC: 2.8.3.16
UniProt
Find proteins for O06644 (Oxalobacter formigenes)
Explore O06644 
Go to UniProtKB:  O06644
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CAO (Subject of Investigation/LOI)
Query on CAO

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]OXIDIZED COENZYME A
C21 H36 N7 O17 P3 S
HWMGJMKHOJKGLQ-IBOSZNHHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.825α = 90
b = 151.825β = 90
c = 100.227γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-08-03
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2018-08-08
    Changes: Advisory, Data collection, Source and taxonomy