1SJJ | pdb_00001sjj

Cryo-EM Structure of Chicken Gizzard Smooth Muscle alpha-Actinin


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • R-Value Work: 
    0.385 (DCC) 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 1SJJ

This is version 1.4 of the entry. See complete history

Literature

A 3-D Reconstruction of Smooth Muscle alpha-Actinin by CryoEm Reveals Two Different Conformations at the Actin-binding Region.

Liu, J.Taylor, D.W.Taylor, K.A.

(2004) J Mol Biology 338: 115-125

  • DOI: https://doi.org/10.1016/j.jmb.2004.02.034
  • Primary Citation Related Structures: 
    1SJJ

  • PubMed Abstract: 

    Cryoelectron microscopy was used to obtain a 3-D image at 2.0 nm resolution of 2-D arrays of smooth muscle alpha-actinin. The reconstruction reveals a well-resolved long central domain with 90 degrees of left-handed twist and near 2-fold symmetry. However, the molecular ends which contain the actin binding and calmodulin-like domains, have different structures oriented approximately 90 degrees to each other. Atomic structures for the alpha-actinin domains were built by homology modeling and assembled into an atomic model. Model building suggests that in the 2-D arrays, the two calponin homology domains that comprise the actin-binding domain have a closed conformation at one end and an open conformation at the other end due to domain swapping. The open and closed conformations of the actin-binding domain suggests flexibility that may underlie Ca2+ regulation. The approximately 90 degrees orientation difference at the molecular ends may underlie alpha-actinin's ability to crosslink actin filaments in nearly any orientation.


  • Organizational Affiliation
    • Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4380, USA.

Macromolecule Content 

  • Total Structure Weight: 199.75 kDa 
  • Atom Count: 14,014 
  • Modeled Residue Count: 1,726 
  • Deposited Residue Count: 1,726 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
actinin
A, B
863Gallus gallusMutation(s): 0 
UniProt
Find proteins for P05094 (Gallus gallus)
Explore P05094 
Go to UniProtKB:  P05094
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05094
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • R-Value Work:  0.385 (DCC) 
Space Group: P 1 1 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 263.1α = 90
b = 203.7β = 90
c = 100γ = 107.1
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONMRC

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-23
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-07-18
    Changes: Author supporting evidence, Data collection
  • Version 1.4: 2024-02-14
    Changes: Data collection, Database references, Refinement description