1RSC

STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.255 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of an effector-induced inactivated state of ribulose 1,5-bisphosphate carboxylase/oxygenase: the binary complex between enzyme and xylulose 1,5-bisphosphate.

Newman, J.Gutteridge, S.

(1994) Structure 2: 495-502


  • PubMed Abstract: 
  • Ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco) catalyzes the addition of CO2 to ribulose 1,5-bisphosphate in all photosynthetic organisms. During catalysis, the bisphosphate is depleted by reactions other than carboxylation and some of the ...

    Ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco) catalyzes the addition of CO2 to ribulose 1,5-bisphosphate in all photosynthetic organisms. During catalysis, the bisphosphate is depleted by reactions other than carboxylation and some of the products are potent inhibitors of rubisco. We have used one of these, xylulose 1,5-bisphosphate as an analogue of the natural substrate and co-crystallized it with the enzyme.


    Related Citations: 
    • The Purification and Preliminary X-Ray Diffraction Studies of Recombinant Synechococcus Ribulose-1,5-Bisphosphate Carboxylase(Slash)Oxygenase from E. Coli
      Newman, J.,Gutteridge, S.
      (1990) J.Biol.Chem. 265: 15154
    • Structure Determination and Refinement of Ribulose-1,5-Bisphosphate Carboxylase(Slash)Oxygenase from Synechococcus Pcc6301
      Newman, J.,Branden, C.-I.,Jones, T.A.
      (1993) Acta Crystallogr.,Sect.D 49: 548
    • The X-Ray Structure of Synechococcus Ribulose Bisphosphate Carboxylase(Slash)Oxygenase Activate Quaternary Complex at 2.2 Angstroms Resolution
      Newman, J.,Gutteridge, S.
      (1993) J.Biol.Chem. 268: 25876


    Organizational Affiliation

    Department of Molecular Biology, Biomedical Centre, Uppsala, Sweden.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN)
A, B, C, D, E, F, G, H
472Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)Gene Names: cbbL (rbcA, rbcL)
EC: 4.1.1.39
Find proteins for P00880 (Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1))
Go to UniProtKB:  P00880
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN)
M, I, N, J, O, K, P, L
111Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)Gene Names: cbbS (rbcS)
EC: 4.1.1.39
Find proteins for P04716 (Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1))
Go to UniProtKB:  P04716
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
XBP
Query on XBP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
XYLULOSE-1,5-BISPHOSPHATE
C5 H12 O11 P2
YAHZABJORDUQGO-WUJLRWPWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Work: 0.255 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 224.400α = 90.00
b = 112.600β = 90.00
c = 200.300γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
X-PLORphasing
X-PLORmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-05-08
    Type: Initial release
  • Version 1.1: 2008-03-05
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance