1RQ6

Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803

• PDB DOI:  https://doi.org/10.2210/pdb1RQ6/pdb
• BMRB: 6028

• Classification: TRANSLATION
• Organism(s): Methanothermobacter thermautotrophicus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-12-04 Released: 2004-12-14 
• Deposition Author(s): Wu, B., Yee, A., Huang, Y.J., Ramelot, T.A., Semesi, A., Jung, J.W., Edward, A., Lee, W., Kennedy, M.A., Montelione, G.T., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

---

Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 112 
• Conformers Submitted: 15 
• Selection Criteria: structures with the least restraint violations,target function 

Literature

The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.

Wu, B., Yee, A., Huang, Y.J., Ramelot, T.A., Cort, J.R., Semesi, A., Jung, J.W., Lee, W., Montelione, G.T., Kennedy, M.A., Arrowsmith, C.H.

(2008) Protein Sci 17: 583-588

• PubMed: 18218711 
• DOI: https://doi.org/10.1110/ps.073272208
• Primary Citation of Related Structures:  
  1RQ6


• PubMed Abstract: 
  

  The ribosomal protein S17E from the archaeon Methanobacterium thermoautotrophicum is a component of the 30S ribosomal subunit. S17E is a 62-residue protein conserved in archaea and eukaryotes and has no counterparts in bacteria. Mammalian S17E is a phosphoprotein component of eukaryotic ribosomes. Archaeal S17E proteins range from 59 to 79 amino acids, and are about half the length of the eukaryotic homologs which have an additional C-terminal region. Here we report the three-dimensional solution structure of S17E. S17E folds into a small three-helix bundle strikingly similar to the FF domain of human HYPA/FBP11, a novel phosphopeptide-binding fold. S17E bears a conserved positively charged surface acting as a robust scaffold for molecular recognition. The structure of M. thermoautotrophicum S17E provides a template for homology modeling of eukaryotic S17E proteins in the family.

---

Organizational Affiliation: 

Division of Cancer Genomics and Proteomics, Ontario Cancer Institute, Toronto, Ontario M5G 2M9, Canada.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 7.21 kDa 
• Atom Count: 506 
• Modelled Residue Count: 62 
• Deposited Residue Count: 62 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S17e	A	62	Methanothermobacter thermautotrophicus	Mutation(s): 0  Gene Names: rps17e, MTH803
UniProt
Find proteins for O26894 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)) Explore O26894  Go to UniProtKB:  O26894

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 112 
• Conformers Submitted: 15 
• Selection Criteria: structures with the least restraint violations,target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-12-14 
Deposition Author(s): Wu, B., Yee, A., Huang, Y.J., Ramelot, T.A., Semesi, A., Jung, J.W., Edward, A., Lee, W., Kennedy, M.A., Montelione, G.T., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2004-12-14
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations