1RLD

SOLID-STATE PHASE TRANSITION IN THE CRYSTAL STRUCTURE OF RIBULOSE 1,5-BIPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Work: 0.211 
  • R-Value Observed: 0.211 

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This is version 1.4 of the entry. See complete history


Literature

Solid-state phase transition in the crystal structure of ribulose 1,5-bisphosphate carboxylase/oxygenase.

Zhang, K.Y.Eisenberg, D.

(1994) Acta Crystallogr D Biol Crystallogr 50: 258-262

  • DOI: https://doi.org/10.1107/S090744499301306X
  • Primary Citation of Related Structures:  
    1RLD

  • PubMed Abstract: 

    The crystal structure is described of ribulose 1,5-bisphosphate carboxylase/oxygenase in a new crystal form. This new form (form V) was obtained from a previously known crystal form (form III) through a solid-state phase transition. The solid-state phase transition was brought about by transferring the crystal from a high-salt low-pH mother liquor to a low-salt high-pH synthetic mother liquor. The interplay of electrostatic repulsion and osmotic pressure induced a unit-cell shrinkage of 24 A along the c axis and expansion of 4 A along the a and b axes. The space group also changed from I422 to I4. The new crystal form was shown to be more resistant to X-ray radiation damage, which suggests the effect of crystal stabilization by non-penetrating molecules. The structure of ribulose 1,5-bisphosphate carboxylase/oxygenase in the new crystal form is compared with that of the old crystal form.


  • Organizational Affiliation

    Molecular Biology Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles 90024-1570, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN)A,
C [auth B]
446Nicotiana tabacumMutation(s): 0 
EC: 4.1.1.39
UniProt
Find proteins for P00876 (Nicotiana tabacum)
Explore P00876 
Go to UniProtKB:  P00876
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00876
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN)B [auth S],
D [auth T]
123Nicotiana tabacumMutation(s): 0 
EC: 4.1.1.39
UniProt
Find proteins for P69249 (Nicotiana tabacum)
Explore P69249 
Go to UniProtKB:  P69249
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP69249
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Work: 0.211 
  • R-Value Observed: 0.211 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 153.01α = 90
b = 153.01β = 90
c = 113.45γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-04-30
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2024-06-05
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-10-30
    Changes: Structure summary