Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 19.20 kDa 
• Atom Count: 1391 
• Modelled Residue Count: 164 
• Deposited Residue Count: 177 
• Unique protein chains: 1

1RL6

RIBOSOMAL PROTEIN L6

• PDB DOI: 10.2210/pdb1RL6/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1999-01-14 Released: 1999-02-02 
• Deposition Author(s): Golden, B.L., Davies, C., Ramakrishnan, V., White, S.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.302 
• R-Value Work: 0.257 

Literature

Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein.

Golden, B.L., Ramakrishnan, V., White, S.W.

(1993) EMBO J 12: 4901-4908

• PubMed: 8262035 
• Primary Citation of Related Structures:  
  1RL6


• PubMed Abstract: 
  

In all cells, protein synthesis is coordinated by the ribosome, a large ribonucleoprotein particle that is composed of > 50 distinct protein molecules and several large RNA molecules. Here we present the crystal structure of ribosomal protein L6 from the thermophilic bacterium Bacillus stearothermophilus solved at 2.6 A resolution. L6 contains two domains with almost identical folds, implying that it was created by an ancient gene duplication event. The surface of the molecule displays several likely sites of interaction with other components of the ribosome. The RNA binding sites appear to be localized in the C-terminal domain whereas the N-terminal domain contains the potential sites for protein-protein interactions. The domain structure is homologous with several other ribosomal proteins and to a large family of eukaryotic RNA binding proteins.

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Related Citations: 

• Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance.
  Davies, C., Bussiere, D.E., Golden, B.L., Porter, S.J., Ramakrishnan, V., White, S.W.
  (1998) J Mol Biol 279: 873

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Organizational Affiliation: 

Department of Microbiology, Duke University Medical Center, Durham, NC 27710.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (RIBOSOMAL PROTEIN L6)	A	177	Geobacillus stearothermophilus	Mutation(s): 0  Gene Names: rplF
UniProt
Find proteins for P02391 (Geobacillus stearothermophilus) Explore P02391  Go to UniProtKB:  P02391

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.302 
• R-Value Work: 0.257 
• Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.8	α = 90
b = 71.8	β = 90
c = 124.5	γ = 120

Software Package:

Software Name	Purpose
PHASES	phasing
X-PLOR	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1999-01-14 
• Released Date: 1999-02-02 
Deposition Author(s): Golden, B.L., Davies, C., Ramakrishnan, V., White, S.W.

Revision History  

• Version 1.0: 1999-02-02
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-10-30
  Changes: Data collection, Database references, Structure summary