1QWF

C-SRC SH3 DOMAIN COMPLEXED WITH LIGAND VSL12

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 1 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

Specific interactions outside the proline-rich core of two classes of Src homology 3 ligands.

Feng, S., Kasahara, C., Rickles, R.J., Schreiber, S.L.

(1995) Proc.Natl.Acad.Sci.USA 92: 12408-12415

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • Two dodecapeptides belonging to distinct classes of Src homology 3 (SH3) ligands and selected from biased phage display libraries were used to investigate interactions between a specificity pocket in the Src SH3 domain and ligant residues flanking th ...

    Two dodecapeptides belonging to distinct classes of Src homology 3 (SH3) ligands and selected from biased phage display libraries were used to investigate interactions between a specificity pocket in the Src SH3 domain and ligant residues flanking the proline-rich core. The solution structures of c-Src SH3 complexed with these peptides were solved by NMR. In addition to proline-rich, polyproline type II helix-forming core, the class I and II ligands each possesses a flanking sequence that occupies a large pocket between the RT and n-Src loops of the SH3 domain. Structural and mutational analyses illustrate how the two classes of SH3 ligands exploit a specificity pocket on the receptor differently to increase binding affinity and specificity.

    Related Citations: 
    • Two Binding Orientations for Peptides to the Src SH3 Domain: Development of a General Model for SH3-Ligand Interactions
      Feng, S.,Chen, J.K.,Yu, H.,Simon, J.A.,Schreiber, S.L.
      (1994) Science 266: 1241
    • Solution Structure of the SH3 Domain of Src and Identification of its Ligand-Binding Site
      Yu, H.,Rosen, M.K.,Shin, T.B.,Seidel-Dugan, C.,Brugge, J.S.,Schreiber, S.L.
      (1992) Science 258: 1665
    • Structural Basis for the Binding of Proline-Rich Peptides to SH3 Domains
      Yu, H.,Chen, J.K.,Feng, S.,Dalgarno, D.C.,Brauer, A.W.,Schreiber, S.L.
      (1994) Cell 76: 933

    Organizational Affiliation: 

    Howard Hughes Medical Institute, Department of Chemistry, Harvard University, Cambridge, MA 02138, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TYROSINE-PROTEIN KINASE TRANSFORMING PROTEIN SRC
A
64Avian sarcoma virus (strain rASV1441)Mutation(s): 0 
Gene Names: V-SRC
EC: 2.7.10.2
Find proteins for P00525 (Avian sarcoma virus (strain rASV1441))
Go to UniProtKB:  P00525
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
VAL-SER-LEU-ALA-ARG-ARG-PRO-LEU-PRO-PRO-LEU-PRO
B
12N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 1 
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORmodel building
X-PLORrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1996-03-08
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance