1QOH

A MUTANT SHIGA-LIKE TOXIN IIE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A Mutant Shiga-Like Toxin Iie Bound to its Receptor Gb(3): Structure of a Group II Shiga-Like Toxin with Altered Binding Specificity

Ling, H.Pannu, N.S.Boodhoo, A.Armstrong, G.D.Clark, C.G.Brunton, J.L.Read, R.J.

(2000) Structure 8: 253

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Shiga-like toxins (SLTs) are produced by the pathogenic strains of Escherichia coli that cause hemorrhagic colitis and hemolytic uremic syndrome. These diseases in humans are generally associated with group II family members (SLT-II and SLT-IIc), whe ...

    Shiga-like toxins (SLTs) are produced by the pathogenic strains of Escherichia coli that cause hemorrhagic colitis and hemolytic uremic syndrome. These diseases in humans are generally associated with group II family members (SLT-II and SLT-IIc), whereas SLT-IIe (pig edema toxin) is central to edema disease of swine. The pentameric B-subunit component of the majority of family members binds to the cell-surface glycolipid globotriaosyl ceramide (Gb(3)), but globotetraosyl ceramide (Gb(4)) is the preferred receptor for SLT-IIe. A double-mutant of the SLT-IIe B subunit that reverses two sequence differences from SLT-II (GT3; Gln65-->Glu, Lys67-->Gln, SLT-I numbering) has been shown to bind more strongly to Gb(3) than to Gb(4).


    Related Citations: 
    • Structure of the Shiga-Like Toxin I B-Pentamer Complexed with an Analogue of its Receptor Gb3
      Ling, H.,Boodhoo, A.,Hazes, B.,Cummings, M.D.,Armstrong, G.D.,Brunton, J.L.,Read, R.J.
      (1998) Biochemistry 37: 1777
    • Crystal Structure of the Cell-Binding B Oligomer of Verotoxin-1 from E. Coli
      Stein, P.E.,Boodhoo, A.,Tyrrell, G.J.,Brunton, J.L.,Read, R.J.
      (1992) Nature 355: 748


    Organizational Affiliation

    Department of Biochemistry, University of Alberta, Edmonton, T6G 2H7, Canada.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SHIGA-LIKE TOXIN IIE B SUBUNIT
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
68Escherichia coliMutation(s): 2 
Gene Names: stx2eB (orf, stx2e B, stxB, stxB2e)
Find proteins for Q47644 (Escherichia coli)
Go to UniProtKB:  Q47644
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 113.490α = 90.00
b = 54.510β = 109.12
c = 116.890γ = 90.00
Software Package:
Software NamePurpose
XENGENdata reduction
XENGENdata scaling
CNSrefinement
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-07-03
    Type: Initial release
  • Version 1.1: 2011-05-08
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance