1QJ8

CRYSTAL STRUCTURE OF THE OUTER MEMBRANE PROTEIN OMPX FROM ESCHERICHIA COLI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.204 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

The Structure of the Outer Membrane Protein Ompx from Escherichia Coli Reveals Mechanisms of Virulence

Vogt, J.Schulz, G.E.

(1999) Structure 7: 1301

  • DOI: 10.1016/s0969-2126(00)80063-5
  • Primary Citation of Related Structures:  
    1QJ8, 1QJ9

  • PubMed Abstract: 
  • The integral outer membrane protein X (OmpX) from Escherichia coli belongs to a family of highly conserved bacterial proteins that promote bacterial adhesion to and entry into mammalian cells. Moreover, these proteins have a role in the resistance against attack by the human complement system ...

    The integral outer membrane protein X (OmpX) from Escherichia coli belongs to a family of highly conserved bacterial proteins that promote bacterial adhesion to and entry into mammalian cells. Moreover, these proteins have a role in the resistance against attack by the human complement system. Here we present the first crystal structure of a member of this family.


    Related Citations: 
    • Strategy for Membrane Protein Crystallization Exemplified with Ompa and Ompx
      Pautsch, A., Vogt, J., Model, K., Siebold, C., Schulz, G.E.
      (1999) Proteins 34: 167

    Organizational Affiliation

    Institut für Organische Chemie und Biochemie, Albert-Ludwigs-Universität, Albertstrasse 21, D-79104, Freiburg im Breisgau, Germany.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
OUTER MEMBRANE PROTEIN XA148Escherichia coliMutation(s): 1 
Gene Names: ompX
Membrane Entity: Yes 
UniProt
Find proteins for P0A917 (Escherichia coli (strain K12))
Explore P0A917 
Go to UniProtKB:  P0A917
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
C8E (Subject of Investigation/LOI)
Query on C8E

Download Ideal Coordinates CCD File 
B [auth A](HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
 Ligand Interaction
PCL (Subject of Investigation/LOI)
Query on PCL

Download Ideal Coordinates CCD File 
C [auth A], D [auth A]PLATINUM(II) DI-CHLORIDE
Cl2 Pt
CLSUSRZJUQMOHH-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.204 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.4α = 90
b = 82.4β = 90
c = 206.3γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MLPHAREphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

  • Deposited Date: 1999-06-23 
  • Released Date: 1999-10-10 
  • Deposition Author(s): Vogt, J., Schulz, G.E.

Revision History  (Full details and data files)

  • Version 1.0: 1999-10-10
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-07-24
    Changes: Data collection