1QH5

HUMAN GLYOXALASE II WITH S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of human glyoxalase II and its complex with a glutathione thiolester substrate analogue.

Cameron, A.D.Ridderstrom, M.Olin, B.Mannervik, B.

(1999) Structure 7: 1067-1078

  • DOI: 10.1016/s0969-2126(99)80174-9
  • Primary Citation of Related Structures:  
    1QH5, 1QH3

  • PubMed Abstract: 
  • Glyoxalase II, the second of two enzymes in the glyoxalase system, is a thiolesterase that catalyses the hydrolysis of S-D-lactoylglutathione to form glutathione and D-lactic acid.


    Organizational Affiliation

    Department of Molecular Biology Uppsala University Biomedical Center Box 590, S-751 24, Uppsala, Sweden Structural Biology Laboratory Department of Chemistry University of York Heslington, York, UK YO10 5DD,. cameron@yorvic.york.ac.uk.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)A, B260Homo sapiensMutation(s): 0 
Gene Names: HAGHGLO2HAGH1
EC: 3.1.2.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q16775 (Homo sapiens)
Explore Q16775 
Go to UniProtKB:  Q16775
PHAROS:  Q16775
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GBP (Subject of Investigation/LOI)
Query on GBP

Download Ideal Coordinates CCD File 
H [auth B]S-(N-HYDROXY-N-BROMOPHENYLCARBAMOYL)GLUTATHIONE
C17 H23 Br N4 O8 S
OGZMPQOWGQBWAV-PRXAMGSTSA-N
 Ligand Interaction
GSH (Subject of Investigation/LOI)
Query on GSH

Download Ideal Coordinates CCD File 
E [auth A]GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A], D [auth A], F [auth B], G [auth B]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.55α = 90
b = 73.8β = 90
c = 164.7γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-09-24
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-12-14
    Changes: Non-polymer description