1Q55
W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography
- PDB DOI: https://doi.org/10.2210/pdb1Q55/pdb
- EM Map EMD-1052: EMDB EMDataResource
- Classification: STRUCTURAL PROTEIN
- Organism(s): Mus musculus
- Mutation(s): No 
- Deposited: 2003-08-06 Released: 2003-10-07 
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 30.0 Å
- Aggregation State: TISSUE 
- Reconstruction Method: TOMOGRAPHY 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
EP-cadherin | 880 | Mus musculus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NDG Query on NDG | H [auth A] IA [auth B] JB [auth C] KC [auth D] O [auth A] | 2-acetamido-2-deoxy-alpha-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N | |||
NAG Query on NAG | E [auth A] F [auth A] FA [auth B] G [auth A] GA [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | AA [auth A] AB [auth B] AC [auth C] AD [auth D] BA [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 30.0 Å
- Aggregation State: TISSUE 
- Reconstruction Method: TOMOGRAPHY 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | IMOD |
Entry History 
Deposition Data
- Released Date: 2003-10-07  Deposition Author(s): He, W., Cowin, P., Stokes, D.L.
Revision History (Full details and data files)
- Version 1.0: 2003-10-07
Type: Initial release - Version 1.1: 2007-10-16
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2018-07-18
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary