Macromolecule Content

• Total Structure Weight: 5.75 kDa 
• Atom Count: 394 
• Modelled Residue Count: 53 
• Deposited Residue Count: 54 
• Unique protein chains: 1

1PYV

NMR solution structure of the mitochondrial F1b presequence peptide from Nicotiana plumbaginifolia

• DOI: 10.2210/pdb1PYV/pdb

• Classification: HYDROLASE
• Organism(s): Nicotiana plumbaginifolia
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-07-09 Released: 2004-04-06 
• Deposition Author(s): Moberg, P., Nilsson, S., Stahl, A., Eriksson, A.C., Glaser, E., Maler, L.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 24 
• Selection Criteria: combination of lowest energy and restraint violations 

Literature

NMR solution structure of the mitochondrial F1beta presequence from Nicotiana plumbaginifolia

Moberg, P., Nilsson, S., Stahl, A., Eriksson, A.C., Glaser, E., Maler, L.

(2004) J Mol Biol 336: 1129-1140

• PubMed: 15037074 
• DOI: 10.1016/j.jmb.2004.01.006
• Primary Citation of Related Structures:  
  1PYV


• PubMed Abstract: 
  

We have isolated, characterized and determined the three-dimensional NMR solution structure of the presequence of ATPsynthase F1beta subunit from Nicotiana plumbaginifolia. A general method for purification of presequences is presented. The method is based on overexpression of a mutant precursor containing a methionine residue introduced at the processing site, followed by CNBr-cleavage and purification of the presequence on a cation-exchange column. The F1beta presequence, 53 amino acid residues long, retained its native properties as evidenced by inhibition of in vitro mitochondrial import and processing at micromolar concentrations. CD spectroscopy revealed that the F1beta presequence formed an alpha-helical structure in membrane mimetic environments such as SDS and DPC micelles (approximately 50% alpha-helix), and in acidic phospholipid bicelles (approximately 60% alpha-helix). The NMR solution structure of the F1beta presequence in SDS micelles was determined on the basis of 518 distance and 21 torsion angle constraints. The structure was found to contain two helices, an N-terminal amphipathic alpha-helix (residues 4-15) and a C-terminal alpha-helix (residues 43-53), separated by a largely unstructured 27 residue long internal domain. The N-terminal amphipathic alpha-helix forms the putative Tom20 receptor binding site, whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site.

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Organizational Affiliation: 

Department of Biochemistry and Biophysics, Arrhenius Laboratories for Natural Sciences, Stockholm University, SE-106 91 Stockholm, Sweden.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase beta chain, mitochondrial precursor	A	54	Nicotiana plumbaginifolia	Mutation(s): 0  Gene Names: ATPB OR ATP2-1, ATPB, ATP2-1 EC: 3.6.3.14 (PDB Primary Data), 7.1.2.2 (UniProt)
Find proteins for P17614 (Nicotiana plumbaginifolia) Explore P17614  Go to UniProtKB:  P17614

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 24 
• Selection Criteria: combination of lowest energy and restraint violations 
• OLDERADO: 1PYV Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2003-07-09 
• Released Date: 2004-04-06 
Deposition Author(s): Moberg, P., Nilsson, S., Stahl, A., Eriksson, A.C., Glaser, E., Maler, L.

Revision History  

• Version 1.0: 2004-04-06
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance