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Download EndnoteThe crystal structure analysis of TM1154, oxidoreductase from Thermotoga maritima
Kim, Y., Joachimiak, A., Edwards, A., Skarina, T., Savchenko, A.To be published.
1PBT
The crystal structure of TM1154, oxidoreductase, sol/devB family from Thermotoga maritima
- DOI: 10.2210/pdb1PBT/pdb
- Classification: HYDROLASE OXIDOREDUCTASE
- Organism(s): Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
- Expression System: Escherichia coli
- Deposited: 2003-05-15 Released: 2003-09-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.225
- R-Value Work: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| 6-phosphogluconolactonase | A | 244 | Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) | Mutation(s): 0 Gene Names: pgl (devB) EC: 3.1.1.31 |
Find proteins for Q9X0N8 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Go to UniProtKB: Q9X0N8 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| FMT Query on FMT | A | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| TRS Query on TRS | A | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.225
- R-Value Work: 0.179
- Space Group: C 2 2 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 37.729 | α = 90.00 |
| b = 75.084 | β = 90.00 |
| c = 148.252 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| ARP/wARP | model building |
| CNS | refinement |
| d*TREK | data reduction |
| SOLVE | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Deposited Date: 2003-05-15
- Released Date: 2003-09-23
- Deposition Author(s): Kim, Y., Joachimiak, A., Edwards, A., Skarina, T., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
