Macromolecule Content

Total Structure Weight: 49.86 kDa
Atom Count: 4,113
Modelled Residue Count: 470
Deposited Residue Count: 472
Unique protein chains: 1

1OOE

Structural Genomics of Caenorhabditis elegans : Dihydropteridine reductase

PDB DOI: 10.2210/pdb1OOE/pdb

Classification: OXIDOREDUCTASE
Organism(s): Caenorhabditis elegans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2003-03-03 Released: 2003-03-18
Deposition Author(s): Symersky, J., Li, S., Nagy, L., Qiu, S., Lin, G., Tsao, J., Luo, D., Carson, M., DeLucas, L., Luo, M., Southeast Collaboratory for Structural Genomics (SECSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.227
R-Value Work: 0.194
R-Value Observed: 0.201

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structural genomics of Caenorhabditis elegans: structure of dihydropteridine reductase.

Symersky, J., Li, S., Carson, M., Luo, D., Luan, C.H., Luo, M.

(2003) Proteins 53: 944-946

PubMed: 14635135 Search on PubMed
DOI: 10.1002/prot.10482
Primary Citation of Related Structures:
1OOE

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dihydropteridine reductase	A, B	236	Caenorhabditis elegans	Mutation(s): 0 Gene Names: qdpr-1, CELE_T03F6.1, T03F6.1 EC: 1.6.99.7
UniProt
Find proteins for Q9XVJ3 (Caenorhabditis elegans) Explore Q9XVJ3 Go to UniProtKB: Q9XVJ3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9XVJ3
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MES Query on MES Download Ideal Coordinates CCD File SDF format, chain D [auth B] SDF format, chain C [auth A] MOL2 format, chain D [auth B] MOL2 format, chain C [auth A]	C [auth A], D [auth B]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.227
R-Value Work: 0.194
R-Value Observed: 0.201
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.926	α = 89.98
b = 50.892	β = 71.98
c = 58.77	γ = 82.05

Software Package:

Software Name	Purpose
CNS	refinement
MAR345	data collection
HKL-2000	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2003-03-18

Deposition Author(s):

Southeast Collaboratory for Structural Genomics (SECSG)

Revision History (Full details and data files)

Version 1.0: 2003-03-18
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.