1OEY

Heterodimer of p40phox and p67phox PB1 domains from human NADPH oxidase

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.212 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Pb1 Domain-Mediated Heterodimerization in Nadph Oxidase and Signaling Complexes of Atypical Protein Kinase C with Par6 and P62

Wilson, M.I., Gill, D.J., Perisic, O., Quinn, M.T., Williams, R.L.

(2003) Mol Cell 12: 39

  • DOI: https://doi.org/10.1016/s1097-2765(03)00246-6
  • Primary Citation of Related Structures:  
    1OEY

  • PubMed Abstract: 

    Maximal activation of NADPH oxidase requires formation of a complex between the p40(phox) and p67(phox) subunits via association of their PB1 domains. We have determined the crystal structure of the p40(phox)/p67(phox) PB1 heterodimer, which reveals that both domains have a beta grasp topology and that they bind in a front-to-back arrangement through conserved electrostatic interactions between an acidic OPCA motif on p40(phox) and basic residues in p67(phox). The structure enabled us to identify residues critical for heterodimerization among other members of the PB1 domain family, including the atypical protein kinase C zeta (PKC zeta) and its partners Par6 and p62 (ZIP, sequestosome). Both Par6 and p62 use their basic "back" to interact with the OPCA motif on the "front" of the PKC zeta. Besides heterodimeric interactions, some PB1 domains, like the p62 PB1, can make homotypic front-to-back arrays.

    • Organizational Affiliation: 

    MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, United Kingdom.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NEUTROPHIL CYTOSOL FACTOR 2
A, B, C, D
83Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P19878 (Homo sapiens)
Explore P19878 
Go to UniProtKB:  P19878
PHAROS:  P19878
GTEx:  ENSG00000116701 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19878
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NEUTROPHIL CYTOSOL FACTOR 4E [auth J],
F [auth K],
G [auth L],
H [auth M]		107Homo sapiensMutation(s): 1 
UniProt & NIH Common Fund Data Resources
Find proteins for Q15080 (Homo sapiens)
Explore Q15080 
Go to UniProtKB:  Q15080
PHAROS:  Q15080
GTEx:  ENSG00000100365 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15080
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.212 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.422α = 90
b = 151.422β = 90
c = 68.317γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-07-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2018-01-24
    Changes: Advisory, Source and taxonomy