1NPO | pdb_00001npo

BOVINE NEUROPHYSIN II COMPLEX WITH OXYTOCIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 
    0.266 (Depositor) 
  • R-Value Work: 
    0.182 (Depositor) 
  • R-Value Observed: 
    0.182 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1NPO

This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the neurophysin-oxytocin complex.

Rose, J.P.Wu, C.K.Hsiao, C.D.Breslow, E.Wang, B.C.

(1996) Nat Struct Biol 3: 163-169

  • DOI: https://doi.org/10.1038/nsb0296-163
  • Primary Citation Related Structures: 
    1NPO

  • PubMed Abstract: 

    The first crystal structure of the pituitary hormone oxytocin complexed with its carrier protein neurophysin has been determined and refined to 3.0 A resolution. The hormone-binding site is located at the end of a 3(10)-helix and involves residues from both domains of each monomer. Hormone residues Tyr 2, which is buried deep in the binding pocket, and Cys 1 have been confirmed as the key residues involved in neurophysin-hormone recognition. We have compared the bound oxytocin observed in the neurophysin-oxytocin complex, the X-ray structures of unbound oxytocin analogues and the NMR-derived structure for bound oxytocin. We find that while our structure is in agreement with the previous crystallographic findings, it differs from the NMR result with regard to how Tyr 2 of the hormone is recognized by neurophysin.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, University of Georgia, Athens 30602, USA.

Macromolecule Content 

  • Total Structure Weight: 21.74 kDa 
  • Atom Count: 1,247 
  • Modeled Residue Count: 178 
  • Deposited Residue Count: 208 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
NEUROPHYSIN II95Bos taurusMutation(s): 0 
UniProt
Find proteins for P01180 (Bos taurus)
Explore P01180 
Go to UniProtKB:  P01180
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01180
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
OXYTOCIN
B, D
9N/AMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
NEUROPHYSIN II95Bos taurusMutation(s): 0 
UniProt
Find proteins for P01180 (Bos taurus)
Explore P01180 
Go to UniProtKB:  P01180
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01180
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free:  0.266 (Depositor) 
  • R-Value Work:  0.182 (Depositor) 
  • R-Value Observed: 0.182 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.05α = 90
b = 69.05β = 90
c = 113.26γ = 90
Software Package:
Software NamePurpose
XENGENdata collection
X-PLORmodel building
X-PLORrefinement
XENGENdata reduction
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-02-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-06-05
    Changes: Data collection, Database references, Other
  • Version 1.4: 2024-10-30
    Changes: Structure summary