Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 7.68 kDa 
• Atom Count: 530 
• Modelled Residue Count: 68 
• Deposited Residue Count: 68 
• Unique protein chains: 1

1NE3

Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744

• PDB DOI: 10.2210/pdb1NE3/pdb
• BMRB: 5620

• Classification: RIBOSOME
• Organism(s): Methanothermococcus thermolithotrophicus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2002-12-10 Released: 2003-12-23 
• Deposition Author(s): Wu, B., Pineda-Lucena, A., Yee, A., Cort, J.R., Ramelot, T.A., Kennedy, M., Edwards, A., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy,target function 

Literature

Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum.

Wu, B., Yee, A., Pineda-Lucena, A., Semesi, A., Ramelot, T.A., Cort, J.R., Jung, J.W., Edwards, A., Lee, W., Kennedy, M., Arrowsmith, C.H.

(2003) Protein Sci 12: 2831-2837

• PubMed: 14627743 
• DOI: 10.1110/ps.03358203
• Primary Citation of Related Structures:  
  1NE3


• PubMed Abstract: 
  

The ribosomal protein S28E from the archaeon Methanobacterium thermoautotrophicum is a component of the 30S ribosomal subunit. Sequence homologs of S28E are found only in archaea and eukaryotes. Here we report the three-dimensional solution structure of S28E by NMR spectroscopy. S28E contains a globular region and a long C-terminal tail protruding from the core. The globular region consists of four antiparallel beta-strands that are arranged in a Greek-key topology. Unique features of S28E include an extended loop L2-3 that folds back onto the protein and a 12-residue charged C-terminal tail with no regular secondary structure and greater flexibility relative to the rest of the protein. The structural and surface resemblance to OB-fold family of proteins and the presence of highly conserved basic residues suggest that S28E may bind to RNA. A broad positively charged surface extending over one side of the beta-barrel and into the flexible C terminus may present a putative binding site for RNA.

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Organizational Affiliation: 

Northeast Structural Genomics Consortium, Division of Molecular and Structural Biology, Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 2M9, Canada.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S28E	A	68	Methanothermococcus thermolithotrophicus	Mutation(s): 0
UniProt
Find proteins for O26356 (Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)) Explore O26356  Go to UniProtKB:  O26356

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy,target function 
• OLDERADO: 1NE3 Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2002-12-10 
• Released Date: 2003-12-23 
Deposition Author(s): Wu, B., Pineda-Lucena, A., Yee, A., Cort, J.R., Ramelot, T.A., Kennedy, M., Edwards, A., Arrowsmith, C.H., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2003-12-23
  Type: Initial release
  
• Version 1.1: 2008-04-28
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Database references, Derived calculations