1M68

YCDX PROTEIN, TRINUCLEAR ZINC SITE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.165 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site

Teplyakov, A.Obmolova, G.Khil, P.P.Howard, A.J.Camerini-Otero, R.D.Gilliland, G.L.

(2003) Proteins 51: 315-318


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Hypothetical protein ycdX A245Escherichia coliMutation(s): 0 
EC: 3.1.3
Find proteins for P75914 (Escherichia coli (strain K12))
Explore P75914 
Go to UniProtKB:  P75914
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.165 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.35α = 90
b = 77.35β = 90
c = 80.05γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
CCP4model building
REFMACrefinement
HKL-2000data reduction
CCP4phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-04-22
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance