1LTT

LACTOSE BINDING TO HEAT-LABILE ENTEROTOXIN REVEALED BY X-RAY CRYSTALLOGRAPHY


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Work: 0.182 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Lactose binding to heat-labile enterotoxin revealed by X-ray crystallography.

Sixma, T.K.Pronk, S.E.Kalk, K.H.van Zanten, B.A.Berghuis, A.M.Hol, W.G.

(1992) Nature 355: 561-564

  • DOI: 10.1038/355561a0
  • Primary Citation of Related Structures:  
    1LTT

  • PubMed Abstract: 
  • Recognition of the oligosaccharide portion of ganglioside GM1 in membranes of target cells by the heat-labile enterotoxin from Escherichia coli is the crucial first step in its pathogenesis, as it is for the closely related cholera toxin. These toxins have five B subunits, which are essential for GM1 binding, and a single A subunit, which needs to be nicked by proteolysis and reduced, yielding an A1-'enzyme' and an A2-'linker' peptide ...

    Recognition of the oligosaccharide portion of ganglioside GM1 in membranes of target cells by the heat-labile enterotoxin from Escherichia coli is the crucial first step in its pathogenesis, as it is for the closely related cholera toxin. These toxins have five B subunits, which are essential for GM1 binding, and a single A subunit, which needs to be nicked by proteolysis and reduced, yielding an A1-'enzyme' and an A2-'linker' peptide. A1 is translocated across the membrane of intestinal epithelial cells, possibly after endocytosis, upon which it ADP-ribosylates the G protein Gs alpha. The mechanism of binding and translocation of these toxins has been extensively investigated, but how the protein is orientated on binding is still not clear. Knowing the precise arrangement of the ganglioside binding sites of the toxins will be useful for designing drugs against the diarrhoeal diseases caused by organisms secreting these toxins and in the development of oral vaccines against them. We present here the three-dimensional structure of the E. coli heat-labile enterotoxin complexed with lactose. This reveals the location of the binding site of the terminal galactose of GM1, which is consistent with toxin binding to the target cell with its A1 fragment pointing away from the membrane. A small helix is identified at the carboxy terminus of A2 which emerges through the central pore of the B subunits and probably comes into contact with the membrane upon binding, whereas the A1 subunit is flexible with respect to the B pentamer.


    Related Citations: 
    • Crystal Structure of a Cholera Toxin-Related Heat-Labile Enterotoxin from E. Coli
      Sixma, T.K., Pronk, S.E., Kalk, K.H., Wartna, E.S., Van Zanten, B.A.M., Witholt, B., Hol, W.G.J.
      (1991) Nature 351: 371
    • Refined Structure of E. Coli Heat Labile Enterotoxin, a Close Relative of Cholera Toxin
      Sixma, T.K., Van Zanten, B.A.M., Dauter, Z., Hol, W.G.J.
      (1993) J Mol Biol 230: 890

    Organizational Affiliation

    BIOSON Research Institute, Department of Chemistry, University of Groningen, The Netherlands.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HEAT-LABILE ENTEROTOXIN, SUBUNIT BA [auth D],
B [auth E],
C [auth F],
D [auth G],
E [auth H]
103Escherichia coliMutation(s): 0 
Gene Names: eltBltpB
UniProt
Find proteins for P32890 (Escherichia coli)
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Go to UniProtKB:  P32890
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UniProt GroupP32890
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
HEAT-LABILE ENTEROTOXIN, SUBUNIT AF [auth A]185Escherichia coliMutation(s): 0 
Gene Names: eltAltpA
UniProt
Find proteins for P06717 (Escherichia coli)
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Go to UniProtKB:  P06717
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UniProt GroupP06717
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
HEAT-LABILE ENTEROTOXIN, SUBUNIT AG [auth C]41Escherichia coliMutation(s): 0 
Gene Names: eltAltpA
UniProt
Find proteins for P06717 (Escherichia coli)
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Go to UniProtKB:  P06717
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UniProt GroupP06717
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 4
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
beta-D-galactopyranose-(1-4)-beta-D-glucopyranoseH [auth B],
I,
J,
K,
L
2N/A Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G84224TW
GlyCosmos:  G84224TW
GlyGen:  G84224TW
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 4
IDChainsNameType/Class2D Diagram3D Interactions
PRD_900004
Query on PRD_900004
H [auth B], I, J, K, Lbeta-lactoseOligosaccharide / Nutrient Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Work: 0.182 
  • R-Value Observed: 0.182 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.8α = 90
b = 101.2β = 90
c = 64.2γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary