1L4A

X-RAY STRUCTURE OF THE NEURONAL COMPLEXIN/SNARE COMPLEX FROM THE SQUID LOLIGO PEALEI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.297 
  • R-Value Observed: 0.300 

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This is version 1.3 of the entry. See complete history


Literature

X-ray structure of a neuronal complexin-SNARE complex from squid.

Bracher, A.Kadlec, J.Betz, H.Weissenhorn, W.

(2002) J Biol Chem 277: 26517-26523

  • DOI: https://doi.org/10.1074/jbc.M203460200
  • Primary Citation of Related Structures:  
    1L4A

  • PubMed Abstract: 

    Nerve terminals release neurotransmitters from vesicles into the synaptic cleft upon transient increases in intracellular Ca(2+). This exocytotic process requires the formation of trans SNARE complexes and is regulated by accessory proteins including the complexins. Here we report the crystal structure of a squid core complexin-SNARE complex at 2.95-A resolution. A helical segment of complexin binds in anti-parallel fashion to the four-helix bundle of the core SNARE complex and interacts at its C terminus with syntaxin and synaptobrevin around the ionic zero layer of the SNARE complex. We propose that this structure is part of a multiprotein fusion machinery that regulates vesicle fusion at a late pre-fusion stage. Accordingly, Ca(2+) may initiate membrane fusion by acting directly or indirectly on complexin, thus allowing the conformational transitions of the trans SNARE complex that are thought to drive membrane fusion.


  • Organizational Affiliation

    European Molecular Biology Laboratory, 6 rue Jules Horowitz, 38042 Grenoble, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SYNAPTOBREVIN80Doryteuthis pealeiiMutation(s): 0 
UniProt
Find proteins for P47194 (Doryteuthis pealeii)
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UniProt GroupP47194
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
S-SYNTAXIN88Doryteuthis pealeiiMutation(s): 0 
UniProt
Find proteins for O46345 (Doryteuthis pealeii)
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UniProt GroupO46345
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
S-SNAP25 fusion protein83Doryteuthis pealeiiMutation(s): 0 
UniProt
Find proteins for Q8T3S4 (Doryteuthis pealeii)
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UniProt GroupQ8T3S4
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
S-SNAP25 fusion protein87Doryteuthis pealeiiMutation(s): 0 
UniProt
Find proteins for Q8T3S4 (Doryteuthis pealeii)
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Go to UniProtKB:  Q8T3S4
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UniProt GroupQ8T3S4
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
SYNAPHIN A79Doryteuthis pealeiiMutation(s): 0 
UniProt
Find proteins for Q95PA1 (Doryteuthis pealeii)
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Go to UniProtKB:  Q95PA1
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UniProt GroupQ95PA1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.297 
  • R-Value Observed: 0.300 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 26.072α = 90
b = 75.43β = 90
c = 243.109γ = 90
Software Package:
Software NamePurpose
BEASTmodel building
CNSrefinement
MOSFLMdata reduction
CCP4data scaling
BEASTphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-07-31
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-08-16
    Changes: Data collection, Database references, Refinement description