1K78

Pax5(1-149)+Ets-1(331-440)+DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.231 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural studies of Ets-1/Pax5 complex formation on DNA.

Garvie, C.W.Hagman, J.Wolberger, C.

(2001) Mol Cell 8: 1267-1276

  • DOI: 10.1016/s1097-2765(01)00410-5
  • Primary Citation of Related Structures:  
    1K78, 1K79, 1K7A

  • PubMed Abstract: 
  • Pax5 regulates the B cell-specific expression of the mb-1 gene together with members of the Ets family of transcriptional activators. The Ets proteins on their own bind poorly to the Pax5/Ets binding site, but can be recruited to the site by cooperative interactions with Pax5 ...

    Pax5 regulates the B cell-specific expression of the mb-1 gene together with members of the Ets family of transcriptional activators. The Ets proteins on their own bind poorly to the Pax5/Ets binding site, but can be recruited to the site by cooperative interactions with Pax5. The structure of the ETS domain of Ets-1 and the paired domain of Pax5 bound to DNA reveals the molecular details of the selective recruitment of different Ets proteins by Pax5. Comparison with structures of Ets-1 alone bound to both high- and low-affinity DNA sites reveals that Pax5 alters the Ets-1 contacts with DNA. The ability of one protein to alter the DNA sequence-specific contacts of another provides a general mechanism for combinatorial regulation of transcription.


    Organizational Affiliation

    Department of Biophysics and Biophysical Chemistry, Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, 725 North Wolfe Street, Baltimore, MD 21205, USA.



Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Paired Box Protein Pax5E [auth A],
G [auth E],
I
149Homo sapiensMutation(s): 0 
Gene Names: PAX5
UniProt & NIH Common Fund Data Resources
Find proteins for Q02548 (Homo sapiens)
Explore Q02548 
Go to UniProtKB:  Q02548
PHAROS:  Q02548
Entity Groups  
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UniProt GroupQ02548
Protein Feature View
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
C-ets-1 ProteinF [auth B],
H [auth F]
110Mus musculusMutation(s): 0 
Gene Names: Ets-1Ets1
UniProt
Find proteins for P27577 (Mus musculus)
Explore P27577 
Go to UniProtKB:  P27577
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27577
Protein Feature View
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  • Reference Sequence
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Entity ID: 1
MoleculeChainsLengthOrganismImage
Pax5/Ets Binding Site on the mb-1 promoterA [auth C],
C [auth G]
27N/A
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsLengthOrganismImage
Pax5/Ets Binding Site on the mb-1 promoterB [auth D],
D [auth H]
27N/A
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.231 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.84α = 90
b = 89.75β = 90
c = 170.74γ = 90
Software Package:
Software NamePurpose
SOLVEphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-01-04
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance