1K47

Crystal Structure of the Streptococcus pneumoniae Phosphomevalonate Kinase (PMK)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily.

Romanowski, M.J.Bonanno, J.B.Burley, S.K.

(2002) Proteins 47: 568-571


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
phosphomevalonate kinaseA, B, C, D, E, F337Streptococcus pneumoniae R6Mutation(s): 7 
Gene Names: mvaK2spr0340
EC: 2.7.4.2
Find proteins for Q8DR49 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6))
Explore Q8DR49 
Go to UniProtKB:  Q8DR49
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,B,C,D,E,FL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 231.606α = 90
b = 231.606β = 90
c = 88.587γ = 120
Software Package:
Software NamePurpose
SnB/Mlphare/DMmodel building
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling
SHAKE-N-BAKEphasing
MLPHAREphasing
DMphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-05-08
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance