1K44

Mycobacterium tuberculosis Nucleoside Diphosphate Kinase

PDB DOI: https://doi.org/10.2210/pdb1K44/pdb

Classification: TRANSFERASE
Organism(s): Mycobacterium tuberculosis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2001-10-05 Released: 2002-05-15
Deposition Author(s): Chen, Y., Morera, S., Lascu, I., Janin, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.246
R-Value Work: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

X-ray structure of Mycobacterium tuberculosis nucleoside diphosphate kinase

Chen, Y., Morera, S., Mocan, J., Lascu, I., Janin, J.

(2002) Proteins 47: 556-557

PubMed: 12001234 Search on PubMed
DOI: https://doi.org/10.1002/prot.10113
Primary Citation of Related Structures:
1K44

Organizational Affiliation

Laboratoire d'Enzymologie et Biochimie Structurales, CNRS UPR9063, Gif-sur-Yvette, France. janin@lebs.cnrs-gif.fr

Macromolecule Content

Total Structure Weight: 87.13 kDa
Atom Count: 6,203
Modelled Residue Count: 810
Deposited Residue Count: 816
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoside Diphosphate Kinase	A, B, C, D, E A, B, C, D, E, F	136	Mycobacterium tuberculosis	Mutation(s): 0 EC: 2.7.4.6
UniProt
Find proteins for P9WJH7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WJH7 Go to UniProtKB: P9WJH7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P9WJH7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.246
R-Value Work: 0.205
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.033	α = 90
b = 98.818	β = 90
c = 127.52	γ = 90

Software Package:

Software Name	Purpose
AMoRE	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2002-05-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2002-05-15
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-07
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.