1J6U

Crystal structure of UDP-N-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.234 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution.

Spraggon, G.Schwarzenbacher, R.Kreusch, A.Lee, C.C.Abdubek, P.Ambing, E.Biorac, T.Brinen, L.S.Canaves, J.M.Cambell, J.Chiu, H.J.Dai, X.Deacon, A.M.DiDonato, M.Elsliger, M.A.Eshagi, S.Floyd, R.Godzik, A.Grittini, C.Grzechnik, S.K.Hampton, E.Jaroszewski, L.Karlak, C.Klock, H.E.Koesema, E.Kovarik, J.S.Kuhn, P.Levin, I.McMullan, D.McPhillips, T.M.Miller, M.D.Morse, A.Moy, K.Ouyang, J.Page, R.Quijano, K.Robb, A.Stevens, R.C.van den Bedem, H.Velasquez, J.Vincent, J.von Delft, F.Wang, X.West, B.Wolf, G.Xu, Q.Hodgson, K.O.Wooley, J.Lesley, S.A.Wilson, I.A.

(2004) Proteins 55: 1078-1081


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UDP-N-acetylmuramate-alanine ligase MurC469Thermotoga maritimaMutation(s): 8 
Gene Names: TM0231
EC: 6.3.2.8
UniProt
Find proteins for Q9WY73 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WY73 
Go to UniProtKB:  Q9WY73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WY73
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.234 
  • Space Group: I 41 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 244.11α = 90
b = 244.11β = 90
c = 244.11γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
MOSFLMdata reduction
CCP4data reduction
SCALEPACKdata scaling
SnBphasing
MLPHAREphasing
CCP4model building
SOLVEphasing
CNSrefinement
CCP4data scaling
CCP4phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-11-06
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Advisory, Refinement description
  • Version 1.4: 2018-07-18
    Changes: Data collection, Database references
  • Version 1.5: 2023-01-25
    Changes: Advisory, Database references, Derived calculations
  • Version 1.6: 2024-11-13
    Changes: Data collection, Structure summary