Download Mendeleycrystal structure analysis of the trichosanthin delta C7
Ding, Y., Too, H.M., Wang, Z.L., Liu, Y.W., Dong, Y.C., Shaw, P.C., Rao, Z.H.To be published.
1J4G
crystal structure analysis of the trichosanthin delta C7
- PDB DOI: 10.2210/pdb1J4G/pdb
- Classification: HYDROLASE
- Organism(s): Trichosanthes kirilowii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2001-09-30 Released: 2001-10-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.235
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Trichosanthin delta C7 | A, B, C, D | 248 | Trichosanthes kirilowii | Mutation(s): 0 EC: 3.2.2.22 |  |
UniProt | |||||
Find proteins for P09989 (Trichosanthes kirilowii) Explore P09989 Go to UniProtKB: P09989 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09989 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | E [auth A], F [auth B], G [auth C], H [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.235
- R-Value Work: 0.174
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.56 | α = 90 |
| b = 74.4 | β = 96.96 |
| c = 87.56 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| CNS | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2001-10-24 Deposition Author(s): Ding, Y., Too, H.M., Wang, Z.L., Liu, Y.W., Dong, Y.C., Shaw, P.C., Rao, Z.H.
Revision History (Full details and data files)
- Version 1.0: 2001-10-24
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2022-12-21
Changes: Database references, Derived calculations
