1J3A

Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii

• PDB DOI: https://doi.org/10.2210/pdb1J3A/pdb

• Classification: RIBOSOME
• Organism(s): Pyrococcus horikoshii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-01-21 Released: 2003-02-04 
• Deposition Author(s): Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.228 
• R-Value Work: 0.209 
• R-Value Observed: 0.209 

Literature

Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii

Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 16.33 kDa 
• Atom Count: 1,148 
• Modelled Residue Count: 129 
• Deposited Residue Count: 142 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L13P	A	142	Pyrococcus horikoshii	Mutation(s): 0  Gene Names: PH1634
UniProt
Find proteins for O59300 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59300  Go to UniProtKB:  O59300

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.228 
• R-Value Work: 0.209 
• R-Value Observed: 0.209 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.082	α = 90
b = 51.542	β = 90
c = 64.198	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SHARP	phasing
CNS	refinement
CCP4	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-02-04 
Deposition Author(s): Nakashima, T., Tanaka, M., Kazama, T., Kawamura, S., Kimura, M., Yao, M., Tanaka, I.

Revision History  

• Version 1.0: 2003-02-04
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references