Macromolecule Content

• Total Structure Weight: 3894.84 
• Atom Count: 275 
• Residue Count: 35 
• Unique protein chains: 1

1IIJ

SOLUTION STRUCTURE OF THE NEU/ERBB-2 MEMBRANE SPANNING SEGMENT

• DOI: 10.2210/pdb1IIJ/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Rattus norvegicus


• Deposited: 2001-04-23 Released: 2001-06-27 
• Deposition Author(s): Goetz, M., Carlotti, C., Bontems, F., Dufourc, E.J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 5 
• Selection Criteria: structures with the lowest energy 

Literature

Evidence for an alpha-helix --> pi-bulge helicity modulation for the neu/erbB-2 membrane-spanning segment. A 1H NMR and circular dichroism study.

Goetz, M., Carlotti, C., Bontems, F., Dufourc, E.J.

(2001) Biochemistry 40: 6534-6540

• PubMed: 11371217 


• PubMed Abstract: 
  

The 35-residue peptide corresponding to the very hydrophobic transmembrane region of the tyrosine kinase receptor neu, Neu(TM35), has been synthesized. The peptide can be solubilized in millimolar concentrations in TFE or incorporated into an SDS-water micellar solution or into well-hydrated DMPC/DCPC bicelles. In all these media, circular dichroism demonstrated that the peptide adopts a helical structure for about 80% of its amino acids. The peptide is monomeric below 2 mM in TFE, as also determined by variable concentration experiments. The three-dimensional solution structure in TFE has been obtained by homonuclear proton NMR and shows a well-defined alpha-helix from residues 4 to 21, then a pi-bulge from Ile(22) to Gly(28), and a final short alpha-helix from positions 29 to 32. This experimental finding is in agreement with structures predicted recently by molecular dynamics calculations in a vacuum [Sajot, N., and Genest, M. (2000) Eur. Biophys. J. 28, 648-662]. The biological implications of a possible retention of this structure in a membrane environment are finally discussed.

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Organizational Affiliation: 

Institut Européen de Chimie et de Biologie, Ecole Polytechnique, CNRS & Universités de Bordeaux I et II, Talence, France.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
ERBB-2 RECEPTOR PROTEIN-TYROSINE KINASE	A	35	Rattus norvegicus	Mutation(s): 0  Gene Names: Erbb2 (Neu) EC: 2.7.10.1
Find proteins for P06494 (Rattus norvegicus) Go to UniProtKB:  P06494

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 5 
• Selection Criteria: structures with the lowest energy 
• Olderado: 1IIJ Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2001-04-23 
• Released Date: 2001-06-27 
• Deposition Author(s): Goetz, M., Carlotti, C., Bontems, F., Dufourc, E.J.

Revision History 

• Version 1.0: 2001-06-27
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance