1HRZ | pdb_00001hrz

THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR

• PDB DOI: https://doi.org/10.2210/pdb1HRZ/pdb
• NAKB: 1HRZ

• Classification: DNA BINDING PROTEIN/DNA
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 1995-05-09 Released: 1995-09-15 
• Deposition Author(s): Clore, G.M., Werner, M.H., Huth, J.R., Gronenborn, A.M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 35 

Literature

Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex.

Werner, M.H., Huth, J.R., Gronenborn, A.M., Clore, G.M.

(1995) Cell 81: 704-705

• PubMed: 7774012 
• DOI: https://doi.org/10.1016/0092-8674(95)90532-4
• Primary Citation Related Structures: 
  1HRY, 1HRZ


• PubMed Abstract: 
  

  The solution structure of the specific complex between the high mobility group (HMG) domain of SRY (hSRY-HMG), the protein encoded by the human testis-determining gene, and its DNA target site in the promoter of the müllerian inhibitory substance gene has been determined by multidimensional NMR spectroscopy. hSRY-HMG has a twisted L shape that presents a concave surface (made up of three helices and the N- and C-terminal strands) to the DNA for sequence-specific recognition. Binding of hSRY-HMG to its specific target site occurs exclusively in the minor groove and induces a large conformational change in the DNA. The DNA in the complex has an overall 70 degrees-80 degrees bend and is helically unwound relative to classical A- and B-DNA. The structure of the complex reveals the origin of sequence-specific binding within the HMG-1/HMG-2 family and provides a framework for understanding the effects of point mutations that cause 46X,Y sex reversal at the atomic level.

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Organizational Affiliation: 
• Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 14.36 kDa 
• Atom Count: 966 
• Modeled Residue Count: 89 
• Deposited Residue Count: 92 
• Unique protein chains: 1
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
HUMAN SRY	C [auth A]	76	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q05066 (Homo sapiens) Explore Q05066  Go to UniProtKB:  Q05066
PHAROS:  Q05066 GTEx:  ENSG00000184895

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3')	A [auth B]	8	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3')	B [auth C]	8	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 35 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1995-09-15 
Deposition Author(s): Clore, G.M., Werner, M.H., Huth, J.R., Gronenborn, A.M.

Revision History  

• Version 1.0: 1995-09-15
  Type: Initial release
  
• Version 1.1: 2008-03-03
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-23
  Changes: Database references, Derived calculations, Other
• Version 1.4: 2024-05-22
  Changes: Data collection