1H8M

Solution structure of ykt6

• PDB DOI: https://doi.org/10.2210/pdb1H8M/pdb

• Classification: ENDOCYTOSIS/EXOCYTOSIS
• Organism(s): Saccharomyces cerevisiae
• Mutation(s): No 


• Deposited: 2001-02-10 Released: 2001-08-07 
• Deposition Author(s): Tochio, H., Tsui, M.M.K., Banfield, D.K., Zhang, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 1 

Literature

An Autoinhibitory Mechanism for Nonsyntaxin Snare Proteins Revealed by the Structure of Ykt6P

Tochio, H., Tsui, M.M.K., Banfield, D.K., Zhang, M.

(2001) Science 293: 698

• PubMed: 11474112 
• DOI: https://doi.org/10.1126/science.1062950
• Primary Citation of Related Structures:  
  1H8M, 1IOU


• PubMed Abstract: 
  

  Ykt6p is a nonsyntaxin SNARE implicated in multiple intracellular membrane trafficking steps. Here we present the structure of the NH2-terminal domain of Ykt6p (Ykt6pN, residues 1 to 140). The structure of Ykt6pN differed entirely from that of syntaxin and resembled the overall fold of the actin regulatory protein, profilin. Like some syntaxins, Ykt6p adopted a folded back conformation in which Ykt6pN bound to its COOH-terminal core domain. The NH2-terminal domain plays an important biological role in the function of Ykt6p, which in vitro studies revealed to include influencing the kinetics and proper assembly of SNARE complexes.

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Organizational Affiliation: 

Department of Biochemistry, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, People's Republic of China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 15.85 kDa 
• Atom Count: 1,117 
• Modelled Residue Count: 140 
• Deposited Residue Count: 140 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SYNAPTOBREVIN HOMOLOG 1	A	140	Saccharomyces cerevisiae	Mutation(s): 0  EC: 2.3.1
UniProt
Find proteins for P36015 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36015  Go to UniProtKB:  P36015

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 1 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2001-08-07 
Deposition Author(s): Tochio, H., Tsui, M.M.K., Banfield, D.K., Zhang, M.

Revision History  

• Version 1.0: 2001-08-07
  Type: Initial release
  
• Version 1.1: 2011-05-07
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-05-15
  Changes: Data collection, Database references, Other