1GDI

CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

The binding of carbon monoxide and nitric oxide to leghaemoglobin in comparison with other haemoglobins.

Harutyunyan, E.H.Safonova, T.N.Kuranova, I.P.Popov, A.N.Teplyakov, A.V.Obmolova, G.V.Valnshtein, B.K.Dodson, G.G.Wilson, J.C.

(1996) J.Mol.Biol. 264: 152-161

  • Primary Citation of Related Structures:  1GDL

  • PubMed Abstract: 
  • Haemoglobins have the ability to discriminate between oxygen and other diatomic molecules. To further understanding of this process the X-ray crystal structures of carbonmonoxy and nitrosyl-leghaemoglobin have been determined at 1.8 A resolution. The ...

    Haemoglobins have the ability to discriminate between oxygen and other diatomic molecules. To further understanding of this process the X-ray crystal structures of carbonmonoxy and nitrosyl-leghaemoglobin have been determined at 1.8 A resolution. The ligand geometry is discussed in detail and the controversial issue of bent versus linear carbon monoxide binding is addressed. The bond angle of 160 degrees for CO-leghaemoglobin is in conflict with recent spectroscopy results on myoglobin but is consistent with angles obtained for myoglobin X-ray crystal structures. In contrast to the numerous carbon monoxide studies, very little stereochemical information is available for the nitric oxide adduct of haemoglobin. This is provided by the X-ray structure of NO-leghaemoglobin, which conforms to expected geometry with an Fe-NO angle of 147 degrees and a lengthened iron-proximal histidine bond. Thus crystallographic evidence is given for the predicted weakening of this bond on the binding of nitric oxide.


    Related Citations: 
    • X-Ray Structural Investigation of Leghemoglobin. Iv. Structure Determination at a Resolution of 2.8 Angstroms
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Nekrasov, Yu.V.
      (1978) Sov.Phys.Crystallogr.(Engl.Transl.) 23: 287
    • Spatial Structure of Lupine Leghemoglobin with the 2.8 Angstroms Resolution (Russian)
      Vainshtein, B.K.,Arutiunian, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.,Nekrasov, Iu.V.
      (1977) Dokl.Akad.Nauk Sssr 233: 238
    • X-Ray Structural Investigation of Leghemoglobin. Vi. Structure of Acetate-Ferrileghemoglobin at a Resolution of 2.0 Angstroms
      Arutyunyan, E.G.,Kuranova, I.P.,Vainshtein, B.K.,Steigemann, W.
      (1980) Sov.Phys.Crystallogr.(Engl.Transl.) 25: 43
    • X-Ray Determination of Three-Dimensional Structure of Leghemoglobin from Lupinus Luteus L. At 5 Angstroms Resolution (Russian)
      Vainshtein, B.K.,Arutiunian, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1974) Dokl.Akad.Nauk Sssr 216: 690
    • Unit-Cell Parameters of Crystalline Plant Hemoglobin
      Arutyunyan, E.G.,Zaitsev, V.N.,Zhiznevskaya, G.Ya.,Borodenko, L.I.
      (1971) Sov.Phys.Crystallogr.(Engl.Transl.) 16: 193
    • X-Ray Study of Leghemoglobin. I.Purification, Crystallization, and Preparation of Derivatives Containing Heavy Atoms
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1975) Sov.Phys.Crystallogr.(Engl.Transl.) 19: 598
    • Structure of Leghaemoglobin from Lupin Root Nodules at 5 Angstroms Resolution
      Vainshtein, B.K.,Harutyunyan, E.H.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovsky, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1975) Nature 254: 163
    • Three-Dimensional Structure of Lupine Leghemoglobin with a Resolution of 2.8 Angstroms
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.,Nekrasov, Yu.V.
      (1977) Dokl.Biochem.(Engl.Transl.) 233: 67
    • Cell Parameters of Crystalline Plant (Lupinus Luteus (Lupine)) Hemoglobin (Russian)
      Arutyunyan, E.G.,Zaitsev, V.N.,Zhiznevskaya, G.Ya.,Borodenko, L.I.
      (1971) Kristallografiya 16: 237
    • X-Ray Diffraction Determination of the Three-Dimensional Structure of Leghemoglobin of Lupinus Luteus L. With 5 Angstroms Resolution
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1974) Dokl.Biochem.(Engl.Transl.) 216: 226
    • X-Ray Structural Investigation of Leghemoglobin. Vi. Structure of Acetate-Ferrileghemoglobin at a Resolution of 2.0 Angstroms (Russian)
      Arutyunyan, E.G.,Kuranova, I.P.,Vainshtein, B.K.,Steigemann, W.
      (1980) Kristallografiya 25: 80
    • The Haem-Accessibility in Leghaemoglobin of Lupinus Luteus as Observed by Proton Magnetic Relaxation
      Vuk-Pavlovic, S.,Benko, B.,Maricic, S.,Lahajnar, G.,Kuranova, I.P.,Vainshtein, B.K.
      (1976) Int.J.Pept.Protein Res. 8: 427
    • X-Ray Structural Study of Leghemoglobin. III. Crystallographic Data on the Structure of the First Component (Russian)
      Arutyunyan, E.G.,Kuranova, I.P.,Grebenko, A.I.,Voronova, A.A.
      (1977) Kristallografiya 22: 634
    • X-Ray Structural Study of Leghemoglobin. III. Crystallographic Data Regarding the Structure of the First Component
      Arutyunyan, E.G.,Kuranova, I.P.,Grebenko, A.I.,Voronova, A.A.
      (1977) Sov.Phys.Crystallogr.(Engl.Transl.) 22: 362
    • X-Ray Diffraction Study of Leghemoglobin. Iv. Determination of the Structure with 2.8 Angstroms Resolution (Russian)
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Nekrasov, Yu.V.
      (1978) Kristallografiya 23: 517
    • X-Ray Structure of Ferrous Complexes of the Yellow Lupin Leghemoglobin with Co and No at 1.8 Angstroms Resolution (Russian)
      Obmolova, G.V.,Safonova, T.N.,Teplyakov, A.V.,Popov, A.N.,Kuranova, I.P.,Harutyunyan, E.G.,Vainshtein, B.K.
      (1988) Bioorg.Khim. 14: 1509
    • X-Ray Study of Leghemoglobin. II. Determination of the Structure with Resolution of 5 Angstroms
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1975) Sov.Phys.Crystallogr.(Engl.Transl.) 19: 602
    • The X-Ray Structural Study of Leghemoglobin. I. Purification, Crystallization, and Production of Derivatives Containing Heavy Atoms (Russian)
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1974) Kristallografiya 19: 964
    • The X-Ray Structural Study of Leghemoglobin. II. Determination of the Structure at 5 Angstroms Resolution (Russian)
      Vainshtein, B.K.,Arutyunyan, E.G.,Kuranova, I.P.,Borisov, V.V.,Sosfenov, N.I.,Pavlovskii, A.G.,Grebenko, A.I.,Konareva, N.V.
      (1974) Kristallografiya 19: 971


    Organizational Affiliation

    Institute of Crystallography, Russian Academy of Sciences, Moscow, Russia.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LEGHEMOGLOBIN (CARBONMONOXY)
A
153Lupinus luteusN/A
Find proteins for P02240 (Lupinus luteus)
Go to UniProtKB:  P02240
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
CMO
Query on CMO

Download SDF File 
Download CCD File 
A
CARBON MONOXIDE
C O
UGFAIRIUMAVXCW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 93.190α = 90.00
b = 51.950β = 98.80
c = 38.300γ = 90.00
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-02-27
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2014-10-22
    Type: Derived calculations
  • Version 1.4: 2017-11-29
    Type: Derived calculations, Other