1G2F

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.233 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes.

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

  • DOI: 10.1016/s0969-2126(01)00632-3
  • Primary Citation of Related Structures:  
    1G2D, 1G2F

  • PubMed Abstract: 

    • Several methods have been developed for creating Cys2His2 zinc finger proteins that recognize novel DNA sequences, and these proteins may have important applications in biological research and gene therapy. In spite of this progress with design/selection methodology, fundamental questions remain about the principles that govern DNA recognition ...

    Several methods have been developed for creating Cys2His2 zinc finger proteins that recognize novel DNA sequences, and these proteins may have important applications in biological research and gene therapy. In spite of this progress with design/selection methodology, fundamental questions remain about the principles that govern DNA recognition. One hypothesis suggests that recognition can be described by a simple set of rules--essentially a "recognition code"--but careful assessment of this proposal has been difficult because there have been few structural studies of selected zinc finger proteins.

    Related Citations: 
    • A General Strategy for Selecting High-Affinity Zinc Finger Proteins for Diverse DNA Target Sites
      Greisman, H.A., Pabo, C.O.
      (1997) Science 275: 657
    • Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions
      Elrod-Erickson, M., Rould, M.A., Nekludova, L., Pabo, C.O.
      (1996) Structure 4: 1171
    • Analysis of Zinc Fingers Optimized via Phage Display: Evaluating the Utility of a Recognition Code
      Wolfe, S.A., Greisman, H.A., Ramm, E.I., Pabo, C.O.
      (1999) J Mol Biol 285: 1917
    Organizational Affiliation: 

    Department of Biology, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.



Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
TATA BOX ZINC FINGER PROTEINE [auth C],
F		90Mus musculusMutation(s): 0 
Gene Names: Egr1, Egr-1, Krox-24
UniProt & NIH Common Fund Data Resources
Find proteins for P08046 (Mus musculus)
Explore P08046 
Go to UniProtKB:  P08046
IMPC:  MGI:95295
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08046
Protein Feature View
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  • Reference Sequence

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Entity ID: 1
MoleculeChainsLengthOrganismImage
5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3'A,
C [auth D]		16N/A
Protein Feature View
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  • Reference Sequence

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Entity ID: 2
MoleculeChainsLengthOrganismImage
5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3'B,
D [auth E]		16N/A
Protein Feature View
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.233 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.8α = 90
b = 104.8β = 90
c = 104.2γ = 120
Software Package:
Software NamePurpose
MLPHAREphasing
X-PLORrefinement
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-09-07
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description