1FDJ | pdb_00001fdj

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER

• PDB DOI: https://doi.org/10.2210/pdb1FDJ/pdb

• Classification: LYASE
• Organism(s): Oryctolagus cuniculus
• Mutation(s): No 


• Deposited: 2000-07-20 Released: 2001-07-25 
• Deposition Author(s): Blom, N.S., White, A., Sygusch, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.214 (Depositor) 
• R-Value Work: 
  0.171 (Depositor) 
• R-Value Observed: 
  0.174 (Depositor) 

Literature

Reaction intermediates of Rabbit liver D-fructose 1,6-bisphosphate Aldolase

Blom, N.S., White, A., Sygusch, J.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 159.95 kDa 
• Atom Count: 15,089 
• Modeled Residue Count: 1,452 
• Deposited Residue Count: 1,452 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE	A, B, C, D	363	Oryctolagus cuniculus	Mutation(s): 0  EC: 4.1.2.13
UniProt
Find proteins for P79226 (Oryctolagus cuniculus) Explore P79226  Go to UniProtKB:  P79226

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
2FP	F [auth A], H [auth B]	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) C6 H14 O12 P2 XPYBSIWDXQFNMH-PYWDMBMJSA-N
G3P	J [auth B]	SN-GLYCEROL-3-PHOSPHATE C3 H9 O6 P AWUCVROLDVIAJX-GSVOUGTGSA-N
13P	I [auth B], L [auth C], N [auth D], O [auth D]	1,3-DIHYDROXYACETONEPHOSPHATE C3 H7 O6 P GNGACRATGGDKBX-UHFFFAOYSA-N
SO4	E [auth A], G [auth B], K [auth C], M [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.214 (Depositor) 
• R-Value Work:  0.171 (Depositor) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 377.25	α = 90
b = 130.54	β = 90
c = 80.03	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
X-GEN	data reduction
X-GEN	data scaling
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2001-07-25 
Deposition Author(s): Blom, N.S., White, A., Sygusch, J.

Revision History  

• Version 1.0: 2001-07-25
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-04
  Changes: Refinement description
• Version 1.4: 2024-12-25
  Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary