1F6F | pdb_00001f6f

CRYSTAL STRUCTURE OF THE TERNARY COMPLEX BETWEEN OVINE PLACENTAL LACTOGEN AND THE EXTRACELLULAR DOMAIN OF THE RAT PROLACTIN RECEPTOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.287 (Depositor) 
  • R-Value Work: 
    0.225 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Ternary complex between placental lactogen and the extracellular domain of the prolactin receptor.

Elkins, P.A.Christinger, H.W.Sandowski, Y.Sakal, E.Gertler, A.de Vos, A.M.Kossiakoff, A.A.

(2000) Nat Struct Biol 7: 808-815

  • DOI: https://doi.org/10.1038/79047
  • Primary Citation Related Structures: 
    1F6F

  • PubMed Abstract: 

    The structure of the ternary complex between ovine placental lactogen (oPL) and the extracellular domain (ECD) of the rat prolactin receptor (rPRLR) reveals that two rPRLR ECDs bind to opposite sides of oPL with pseudo two-fold symmetry. The two oPL receptor binding sites differ significantly in their topography and electrostatic character. These binding interfaces also involve different hydrogen bonding and hydrophobic packing patterns compared to the structurally related human growth hormone (hGH)-receptor complexes. Additionally, the receptor-receptor interactions are different from those of the hGH-receptor complex. The conformational adaptability of prolactin and growth hormone receptors is evidenced by the changes in local conformations of the receptor binding loops and more global changes induced by shifts in the angular relationships between the N- and C-terminal domains, which allow the receptor to bind to the two topographically distinct sites of oPL.


  • Organizational Affiliation
    • Department of Protein Engineering, Genentech, Inc., 1 DNA Way, South San Francisco, California 94080, USA.

Macromolecule Content 

  • Total Structure Weight: 71.77 kDa 
  • Atom Count: 4,627 
  • Modeled Residue Count: 547 
  • Deposited Residue Count: 619 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PLACENTAL LACTOGEN199Ovis ariesMutation(s): 0 
UniProt
Find proteins for P16038 (Ovis aries)
Explore P16038 
Go to UniProtKB:  P16038
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16038
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
PROLACTIN RECEPTOR
B, C
210Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P05710 (Rattus norvegicus)
Explore P05710 
Go to UniProtKB:  P05710
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05710
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.287 (Depositor) 
  • R-Value Work:  0.225 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 168.18α = 90
b = 63.1β = 118.63
c = 88.43γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
X-PLORrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-07-04
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-10-30
    Changes: Data collection, Database references, Structure summary