Biological Assembly 1  

 3D View: Structure

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 57.89 kDa 
• Atom Count: 3348 
• Modelled Residue Count: 415 
• Deposited Residue Count: 503 
• Unique protein chains: 2

1F45

HUMAN INTERLEUKIN-12

• DOI: 10.2210/pdb1F45/pdb

• Classification: CYTOKINE/CYTOKINE
• Organism(s): Homo sapiens
• Expression System: Cricetulus griseus
• Mutation(s): Yes 


• Deposited: 2000-06-07 Released: 2001-06-20 
• Deposition Author(s): Yoon, C., Johnston, S.C., Tang, J., Tobin, J.F., Somers, W.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 0.284 
• R-Value Work: 0.241 
• R-Value Observed: 0.241 

Literature

Charged residues dominate a unique interlocking topography in the heterodimeric cytokine interleukin-12.

Yoon, C., Johnston, S.C., Tang, J., Stahl, M., Tobin, J.F., Somers, W.S.

(2000) EMBO J 19: 3530-3541

• PubMed: 10899108 
• DOI: 10.1093/emboj/19.14.3530
• Primary Citation of Related Structures:  
  1F45, 1F42


• PubMed Abstract: 
  

Human interleukin-12 (IL-12, p70) is an early pro-inflammatory cytokine, comprising two disulfide-linked subunits, p35 and p40. We solved the crystal structures of monomeric human p40 at 2.5 A and the human p70 complex at 2.8 A resolution, which reveals that IL-12 is similar to class 1 cytokine-receptor complexes. They also include the first description of an N-terminal immunoglobulin-like domain, found on the p40 subunit. Several charged residues from p35 and p40 intercalate to form a unique interlocking topography, shown by mutagenesis to be critical for p70 formation. A central arginine residue from p35 projects into a deep pocket on p40, which may be an ideal target for a small molecule antagonist of IL-12 formation.

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Organizational Affiliation: 

Departments of Musculoskeletal Sciences and Biological Chemistry, Wyeth Research, 87 Cambridge Park Drive, Cambridge, MA 02140, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
INTERLEUKIN-12 BETA CHAIN	A	306	Homo sapiens	Mutation(s): 0  Gene Names: IL12B, NKSF2
UniProt & NIH Common Fund Data Resources
Find proteins for P29460 (Homo sapiens) Explore P29460  Go to UniProtKB:  P29460
PHAROS:  P29460 GTEx:  ENSG00000113302

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
INTERLEUKIN-12 ALPHA CHAIN	B	197	Homo sapiens	Mutation(s): 1  Gene Names: IL12A, NKSF1
UniProt & NIH Common Fund Data Resources
Find proteins for P29459 (Homo sapiens) Explore P29459  Go to UniProtKB:  P29459
PHAROS:  P29459 GTEx:  ENSG00000168811

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Chain Length	2D Diagram	Glycosylation
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C	3		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G62182OO GlyCosmos:  G62182OO GlyGen:  G62182OO

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.80 Å
• R-Value Free: 0.284 
• R-Value Work: 0.241 
• R-Value Observed: 0.241 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 112.9	α = 90
b = 154.2	β = 90
c = 101.7	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2000-06-07 
• Released Date: 2001-06-20 
Deposition Author(s): Yoon, C., Johnston, S.C., Tang, J., Tobin, J.F., Somers, W.S.

Revision History  

• Version 1.0: 2001-06-20
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary