Download MendeleyThe 1.3 A Crystal Structure of Rhodobacter sphaeroides Dimethylsulfoxide Reductase Reveals Two Distinct Molybdenum Coordination Environments
Li, H.K., Temple, K., Rajagopalan, K.V., Schindelin, H.(2000) J Am Chem Soc 122: 7673-7680
1EU1
THE CRYSTAL STRUCTURE OF RHODOBACTER SPHAEROIDES DIMETHYLSULFOXIDE REDUCTASE REVEALS TWO DISTINCT MOLYBDENUM COORDINATION ENVIRONMENTS.
- PDB DOI: https://doi.org/10.2210/pdb1EU1/pdb
- Entry: 1EU1 supersedes: 1CXS, 1CXT
- Classification: OXIDOREDUCTASE
- Organism(s): Cereibacter sphaeroides
- Expression System: Bacteria
- Mutation(s): Yes
- Deposited: 2000-04-13 Released: 2000-08-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.145
- R-Value Work: 0.121
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DIMETHYL SULFOXIDE REDUCTASE | 780 | Cereibacter sphaeroides | Mutation(s): 1 EC: 1.8.99 (PDB Primary Data), 1.7.2.3 (UniProt), 1.8.5.3 (UniProt) |  | |
UniProt | |||||
Find proteins for Q57366 (Cereibacter sphaeroides) Explore Q57366 Go to UniProtKB: Q57366 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q57366 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MGD Query on MGD | G [auth A], H [auth A] | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C20 H26 N10 O13 P2 S2 VQAGYJCYOLHZDH-ILXWUORBSA-N |  | ||
| EPE Query on EPE | L [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| GLC Query on GLC | B [auth A], C [auth A], D [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N |  | ||
| CD Query on CD | F [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| 6MO Query on 6MO | I [auth A] | MOLYBDENUM(VI) ION Mo HCNGUXXTNNIKCQ-UHFFFAOYSA-N |  | ||
| O Query on O | J [auth A], K [auth A] | OXYGEN ATOM O XLYOFNOQVPJJNP-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.145
- R-Value Work: 0.121
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.176 | α = 90 |
| b = 141.718 | β = 90 |
| c = 59.812 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AMoRE | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2000-08-02 Deposition Author(s): Li, H.K., Temple, K., Rajagopalan, K.V., Schindelin, H.
- This entry supersedes: 1CXS, 1CXT
Revision History (Full details and data files)
- Version 1.0: 2000-08-02
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2018-01-31
Changes: Experimental preparation - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary - Version 1.5: 2024-11-13
Changes: Data collection, Database references, Structure summary
