1EE2

THE STRUCTURE OF STEROID-ACTIVE ALCOHOL DEHYDROGENASE AT 1.54 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.145 
  • R-Value Observed: 0.148 

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This is version 1.2 of the entry. See complete history


Literature

Structural basis for substrate specificity differences of horse liver alcohol dehydrogenase isozymes.

Adolph, H.W.Zwart, P.Meijers, R.Hubatsch, I.Kiefer, M.Lamzin, V.Cedergren-Zeppezauer, E.

(2000) Biochemistry 39: 12885-12897

  • DOI: 10.1021/bi001376s
  • Primary Citation of Related Structures:  
    1EE2

  • PubMed Abstract: 
  • A structure determination in combination with a kinetic study of the steroid converting isozyme of horse liver alcohol dehydrogenase, SS-ADH, is presented. Kinetic parameters for the substrates, 5beta-androstane-3beta,17beta-ol, 5beta-androstane-17beta-ol-3-one, ethanol, and various secondary alcohols and the corresponding ketones are compared for the SS- and EE-isozymes which differ by nine amino acid substitutions and one deletion ...

    A structure determination in combination with a kinetic study of the steroid converting isozyme of horse liver alcohol dehydrogenase, SS-ADH, is presented. Kinetic parameters for the substrates, 5beta-androstane-3beta,17beta-ol, 5beta-androstane-17beta-ol-3-one, ethanol, and various secondary alcohols and the corresponding ketones are compared for the SS- and EE-isozymes which differ by nine amino acid substitutions and one deletion. Differences in substrate specificity and stereoselectivity are explained on the basis of individual kinetic rate constants for the underlying ordered bi-bi mechanism. SS-ADH was crystallized in complex with 3alpha,7alpha,12alpha-trihydroxy-5beta-cholan -24-acid (cholic acid) and NAD(+), but microspectrophotometric analysis of single crystals proved it to be a mixed complex containing 60-70% NAD(+) and 30-40% NADH. The crystals belong to the space group P2(1) with cell dimensions a = 55.0 A, b = 73.2 A, c = 92.5 A, and beta = 102.5 degrees. A 98% complete data set to 1.54-A resolution was collected at 100 K using synchrotron radiation. The structure was solved by the molecular replacement method utilizing EE-ADH as the search model. The major structural difference between the isozymes is a widening of the substrate channel. The largest shifts in C(alpha) carbon positions (about 5 A) are observed in the loop region, in which a deletion of Asp115 is found in the SS isozyme. SS-ADH easily accommodates cholic acid, whereas steroid substrates of similar bulkiness would not fit into the EE-ADH substrate site. In the ternary complex with NAD(+)/NADH, we find that the carboxyl group of cholic acid ligates to the active site zinc ion, which probably contributes to the strong binding in the ternary NAD(+) complex.


    Related Citations: 
    • Substrate Specificity and Stereoselectivity of Horse Liver Alcohol Dehydrogenase. Kinetic Evaluation of Binding and Activation Parameters Controlling the Catalitic Cycles of Unbranched, Acyclic Secondary Alcohols and Ketones as Substrates of the Native and Active-Site-Specific Co(II)-Substituted Enzyme
      Adolph, H.W., Maurer, P., Scheinder-Bernlohr, H., Sartorius, C., Zeppezauer, M.
      (1991) Eur J Biochem 201: 615
    • Preparation and Characterization of Isozymes and Isoforms of Horse Liver Alcohol Dehydrogenase
      Hubatsch, I., Maurer, P., Engel, D., Adolph, H.W.
      (1995) J Chromatogr A 711: 105
    • Electrostatic Effects in the Kinetics of Coenzyme Binding to Isozymes of Alcohol Dehydrogenase from Horse Liver
      Adolph, H.W., Kiefer, M., Cedergren-Zeppezauer, E.
      (1997) Biochemistry 36: 8743

    Organizational Affiliation

    Fachrichtung 8.8 Biochemie, Universität des Saarlandes, D-66041 Saarbrücken, Federal Republic of Germany. hwadolph@rz.uni-sb.de



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ALCOHOL DEHYDROGENASEA, B373Equus caballusMutation(s): 0 
EC: 1.1.1.1
UniProt
Find proteins for P00328 (Equus caballus)
Explore P00328 
Go to UniProtKB:  P00328
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.145 
  • R-Value Observed: 0.148 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.03α = 90
b = 73.16β = 102.48
c = 92.49γ = 90
Software Package:
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 2000-01-30 
  • Released Date: 2000-10-27 
  • Deposition Author(s): Adolph, H.W.

Revision History  (Full details and data files)

  • Version 1.0: 2000-10-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance