1E8K

Cyclophilin 3 Complexed With Dipeptide Ala-Pro


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The First Direct Determination of a Ligand Binding Constant in Protein Crystals

Wu Sy, S.Y.Dornan, J.Kontopidis, G.Taylor, P.Walkinshaw, M.D.

(2001) Angew.Chem.Int.Ed.Engl. 40: 582


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3
A
173Caenorhabditis elegansGene Names: cyn-3 (cyp-3)
EC: 5.2.1.8
Find proteins for P52011 (Caenorhabditis elegans)
Go to UniProtKB:  P52011
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ALA
Query on ALA

Download SDF File 
Download CCD File 
A
ALANINE
C3 H7 N O2
QNAYBMKLOCPYGJ-REOHCLBHSA-N
 Ligand Interaction
PRO
Query on PRO

Download SDF File 
Download CCD File 
A
PROLINE
C5 H9 N O2
ONIBWKKTOPOVIA-BYPYZUCNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.251 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 61.035α = 90.00
b = 61.035β = 90.00
c = 122.660γ = 90.00
Software Package:
Software NamePurpose
SHELXL-97refinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-09-20
    Type: Initial release
  • Version 1.1: 2013-07-17
    Type: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Source and taxonomy, Structure summary, Version format compliance
  • Version 1.2: 2013-07-24
    Type: Derived calculations, Other