Endothiapepsin complex with renin inhibitor MERCK-KGAA-EMD56133

Experimental Data Snapshot

  • Resolution: 2.05 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.186 

wwPDB Validation   3D Report Full Report

This is version 1.2 of the entry. See complete history


Refinement of Four Endothiapepsin Inhibitor Complexes. Crystallographic Studies of Cytochrome Ch from Methylobacterium Extorquens and Inhibitor Complexes of Aspartic Proteinases.

Read, J.A.

(1999) Ph D Thesis 

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ENDOTHIAPEPSINA [auth E]330Cryphonectria parasiticaMutation(s): 0 
Gene Names: EAPAEPN-1
EC: (PDB Primary Data), (UniProt)
Find proteins for P11838 (Cryphonectria parasitica)
Explore P11838 
Go to UniProtKB:  P11838
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
0GQ (Subject of Investigation/LOI)
Query on 0GQ

Download Ideal Coordinates CCD File 
B [auth E]4-amino-N-{(1R,8R,9R,13R)-16-(4-amino-2-methylpyrimidin-5-yl)-1-benzyl-8-(cyclohexylmethyl)-9-hydroxy-13-[(1S)-1-methylpropyl]-2,6,11,14-tetraoxo-3,7,12,15-tetraazahexadec-1-yl}piperidine-1-carboxamide
C41 H64 N10 O6
 Ligand Interaction
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000296 (0GQ)
Query on PRD_000296
B [auth E]MERCK-KGAA-EMD56133Peptide-like /  Inhibitor  Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Resolution: 2.05 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.186 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.21α = 90
b = 74.71β = 109.46
c = 46.16γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
ROTAVATAdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-09-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • Version 1.2: 2012-11-30
    Changes: Other