1E20

The FMN binding protein AtHal3

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 

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This is version 1.5 of the entry. See complete history. 


Literature

The X-Ray Structure of the Fmn-Binding Protein Athal3 Provides the Structural Basis for the Activity of a Regulatory Subunit Involved in Signal Transduction

Albert, A., Martinez-Ripoll, M., Espinosa-Ruiz, A., Yenush, L., Culianez-Macia, F.A., Serrano, R.

(2000) Structure 8: 961

  • DOI: 10.1016/s0969-2126(00)00187-8
  • Primary Citation of Related Structures:  
    1E20

  • PubMed Abstract: 

    • The Arabidopsis thaliana HAL3 gene product encodes for an FMN-binding protein (AtHal3) that is related to plant growth and salt and osmotic tolerance. AtHal3 shows sequence homology to ScHal3, a regulatory subunit of the Saccharomyces cerevisae serine/threonine phosphatase PPz1 ...

    The Arabidopsis thaliana HAL3 gene product encodes for an FMN-binding protein (AtHal3) that is related to plant growth and salt and osmotic tolerance. AtHal3 shows sequence homology to ScHal3, a regulatory subunit of the Saccharomyces cerevisae serine/threonine phosphatase PPz1. It has been proposed that AtHal3 and ScHal3 have similar roles in cellular physiology, as Arabidopsis transgenic plants that overexpress AtHal3 and yeast cells that overexpress ScHal3 display similar phenotypes of improved salt tolerance. The enzymatic activity of AtHal3 has not been investigated. However, the AtHal3 sequence is homologous to that of EpiD, a flavoprotein from Staphylococcus epidermidis that recognizes a peptidic substrate and subsequently catalyzes the alpha, beta-dehydrogenation of its C-terminal cysteine residue.

    Organizational Affiliation: 

    Grupo de Cristalografía Macromolecular y Biología Estructural, Instituto de Química Física 'Rocasolano', Consejo Superior de Investigaciones Científicas, Serrano 119, E-28006, Madrid, Spain. xalbert@iqfr.csic.es



Macromolecules
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(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HALOTOLERANCE PROTEIN HAL3A209Arabidopsis thalianaMutation(s): 0 
Gene Names: HAL3A, COAC1, At3g18030, MBG14.2
EC: 4.1.1.36
UniProt
Find proteins for Q9SWE5 (Arabidopsis thaliana)
Explore Q9SWE5 
Go to UniProtKB:  Q9SWE5
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN (Subject of Investigation/LOI)
Query on FMN
Download Ideal Coordinates CCD File 
 B [auth A]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N		 Ligand Interaction
BME
Query on BME
Download Ideal Coordinates CCD File 
 D [auth A]BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N		 Ligand Interaction
NI
Query on NI
Download Ideal Coordinates CCD File 
 C [auth A]NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.210 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 112.309α = 90
b = 112.309β = 90
c = 33.182γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-09-11
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-07-12
    Changes: Advisory, Derived calculations
  • Version 1.4: 2018-05-30
    Changes: Data collection
  • Version 1.5: 2018-10-24
    Changes: Advisory, Data collection, Derived calculations