1DNV

PARVOVIRUS (DENSOVIRUS) FROM GALLERIA MELLONELLA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Work: 0.271 
  • R-Value Observed: 0.271 

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This is version 1.2 of the entry. See complete history


Literature

The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution.

Simpson, A.A.Chipman, P.R.Baker, T.S.Tijssen, P.Rossmann, M.G.

(1998) Structure 6: 1355-1367

  • DOI: 10.1016/s0969-2126(98)00136-1
  • Primary Citation of Related Structures:  
    1DNV

  • PubMed Abstract: 
  • Parvoviruses infect vertebrates, insects and crustaceans. Many arthropod parvoviruses (densoviruses) are highly pathogenic and kill approximately 90% of the host larvae within days, making them potentially effective as selective pesticides. Improved understanding of densoviral structure and function is therefore desirable ...

    Parvoviruses infect vertebrates, insects and crustaceans. Many arthropod parvoviruses (densoviruses) are highly pathogenic and kill approximately 90% of the host larvae within days, making them potentially effective as selective pesticides. Improved understanding of densoviral structure and function is therefore desirable. There are four different initiation sites for translation of the densovirus capsid protein mRNA, giving rise to the viral proteins VP1 to VP4. Sixty copies of the common, C-terminal domain make up the ordered part of the icosahedral capsid.


    Related Citations: 
    • Functional Implications of the Structure of the Murine Parvovirus, Minute Virus of Mice
      Agbandje-McKenna, M., Llamas-Saiz, A.L., Wang, F., Tattersall, P., Rossmann, M.G.
      (1998) Structure 6: 1369
    • Densonucleosis Viruses Constitute an Increasingly Diversified Subfamily within the Parvoviruses
      Tijssen, P., Bergoin, M.
      (1995) Semin Virol 6: 347
    • Structure, Sequence, and Function Correlations Among Parvoviruses
      Chapman, M.S., Rossmann, M.G.
      (1993) Virology 194: 491
    • Structure Determination of Feline Panleukopenia Virus Empty Particles
      Agbandje, M., McKenna, R., Rossmann, M.G., Strassheim, M.L., Parrish, C.R.
      (1993) Proteins 16: 155
    • The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications
      Tsao, J., Chapman, M.S., Agbandje, M., Keller, W., Smith, K., Wu, H., Luo, M., Smith, T.J., Rossmann, M.G., Compans, R.W., Parrish, C.R.
      (1991) Science 251: 1456

    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GALLERIA MELLONELLA DENSOVIRUS CAPSID PROTEINA437Galleria mellonella densovirusMutation(s): 0 
Gene Names: VP
Find proteins for Q90125 (Galleria mellonella densovirus)
Explore Q90125 
Go to UniProtKB:  Q90125
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Work: 0.271 
  • R-Value Observed: 0.271 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 264.44α = 90
b = 264.44β = 90
c = 683.45γ = 90
Software Package:
Software NamePurpose
GLRFphasing
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-02-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance