1DGP

ARISTOLOCHENE SYNTHASE FARNESOL COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.235 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Crystal structure determination of aristolochene synthase from the blue cheese mold, Penicillium roqueforti.

Caruthers, J.M.Kang, I.Rynkiewicz, M.J.Cane, D.E.Christianson, D.W.

(2000) J Biol Chem 275: 25533-25539

  • DOI: 10.1074/jbc.M000433200
  • Primary Citation of Related Structures:  
    1DGP, 1DI1

  • PubMed Abstract: 
  • The 2.5-A resolution crystal structure of recombinant aristolochene synthase from the blue cheese mold, Penicillium roqueforti, is the first of a fungal terpenoid cyclase. The structure of the enzyme reveals active site features that participate in the cyclization of the universal sesquiterpene cyclase substrate, farnesyl diphosphate, to form the bicyclic hydrocarbon aristolochene ...

    The 2.5-A resolution crystal structure of recombinant aristolochene synthase from the blue cheese mold, Penicillium roqueforti, is the first of a fungal terpenoid cyclase. The structure of the enzyme reveals active site features that participate in the cyclization of the universal sesquiterpene cyclase substrate, farnesyl diphosphate, to form the bicyclic hydrocarbon aristolochene. Metal-triggered carbocation formation initiates the cyclization cascade, which proceeds through multiple complex intermediates to yield one exclusive structural and stereochemical isomer of aristolochene. Structural homology of this fungal cyclase with plant and bacterial terpenoid cyclases, despite minimal amino acid sequence identity, suggests divergence from a common, primordial ancestor in the evolution of terpene biosynthesis.


    Organizational Affiliation

    Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia 19104-6323, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ARISTOLOCHENE SYNTHASEA, B300Penicillium roquefortiMutation(s): 0 
Gene Names: prx2ari1ORF2
EC: 4.1.99.7 (PDB Primary Data), 4.2.3.9 (UniProt)
UniProt
Find proteins for Q03471 (Penicillium roqueforti)
Explore Q03471 
Go to UniProtKB:  Q03471
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FOH (Subject of Investigation/LOI)
Query on FOH

Download Ideal Coordinates CCD File 
D [auth A], F [auth B](2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
C15 H26 O
CRDAMVZIKSXKFV-FBXUGWQNSA-N
 Ligand Interaction
FOF (Subject of Investigation/LOI)
Query on FOF

Download Ideal Coordinates CCD File 
C [auth A], E [auth B](2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol
C15 H26 O
CRDAMVZIKSXKFV-YFVJMOTDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.235 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 208.2α = 90
b = 208.2β = 90
c = 139.6γ = 90
Software Package:
Software NamePurpose
PHASESphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-02-07
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2012-06-06
    Changes: Derived calculations
  • Version 2.0: 2019-02-20
    Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary