1D2D

Hamster EprS second repeated element. NMR, 5 structures


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases.

Cahuzac, B.Berthonneau, E.Birlirakis, N.Guittet, E.Mirande, M.

(2000) EMBO J. 19: 445-452

  • DOI: 10.1093/emboj/19.3.445
  • Primary Citation of Related Structures:  1R1B

  • PubMed Abstract: 
  • Aminoacyl-tRNA synthetases of higher eukaryotes possess polypeptide extensions in contrast to their prokaryotic counterparts. These extra domains of poorly understood function are believed to be involved in protein-protein or protein-RNA interactions ...

    Aminoacyl-tRNA synthetases of higher eukaryotes possess polypeptide extensions in contrast to their prokaryotic counterparts. These extra domains of poorly understood function are believed to be involved in protein-protein or protein-RNA interactions. Here we showed by gel retardation and filter binding experiments that the repeated units that build the linker region of the bifunctional glutamyl-prolyl-tRNA synthetase had a general RNA-binding capacity. The solution structure of one of these repeated motifs was also solved by NMR spectroscopy. One repeat is built around an antiparallel coiled-coil. Strikingly, the conserved lysine and arginine residues form a basic patch on one side of the structure, presenting a suitable docking surface for nucleic acids. Therefore, this repeated motif may represent a novel type of general RNA-binding domain appended to eukaryotic aminoacyl-tRNA synthetases to serve as a cis-acting tRNA-binding cofactor.


    Organizational Affiliation

    Laboratoire de RMN, ICSN-CNRS, Gif-sur-Yvette, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TRNA SYNTHETASE
A
59Cricetulus griseusGene Names: EPRS (QPRS)
EC: 6.1.1.15, 6.1.1.17
Find proteins for Q7SIA2 (Cricetulus griseus)
Go to Gene View: EPRS
Go to UniProtKB:  Q7SIA2
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 
  • Olderado: 1D2D Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-05-24
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance