Download MendeleyMutated Shiga-like toxin B subunit (D17E/W34A) complexed with receptor Gb3 analogue
Ling, H., Brunton, J.L., Read, R.J.To be published.
1D1K
MUTATED SHIGA-LIKE TOXIN B SUBUNIT (D17E/W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE
- PDB DOI: 10.2210/pdb1D1K/pdb
- Classification: TOXIN
- Organism(s): Phage h30
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 1999-09-17 Released: 2000-09-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218
- R-Value Work: 0.193
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SHIGA-LIKE TOXIN I SUBUNIT B | A, B, C, D, E | 69 | Phage h30 | Mutation(s): 2 Gene Names: stxB |  |
UniProt | |||||
Find proteins for P69178 (Bacteriophage H30) Explore P69178 Go to UniProtKB: P69178 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P69178 | ||||
Protein Feature ViewExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | F, G, H, I, J | 3 |  | N/A | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G79094AA GlyCosmos: G79094AA GlyGen: G79094AA | |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.218
- R-Value Work: 0.193
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.223 | α = 106.05 |
| b = 44.131 | β = 106.38 |
| c = 53.71 | γ = 99.26 |
| Software Name | Purpose |
|---|---|
| X-GEN | data scaling |
| X-GEN | data reduction |
| AMoRE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2000-09-20 Deposition Author(s): Ling, H., Brunton, J.L., Read, R.J.
Revision History (Full details and data files)
- Version 1.0: 2000-09-20
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2012-07-18
Changes: Source and taxonomy - Version 1.4: 2017-10-04
Changes: Refinement description - Version 1.5: 2018-03-14
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary
