Download MendeleyThe Structure of Tyrosine Phenol-Lyase from Erwinia Herbicola
Mikami, B., Yamamoto, Y., Katayama, T., Suzuki, H., Kumagai, H.To be published.
1C7G | pdb_00001c7g
1C7G | pdb_00001c7g
TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA
- PDB DOI: https://doi.org/10.2210/pdb1C7G/pdb
- Classification: LYASE
- Organism(s): Pantoea agglomerans pv. gypsophilae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2000-02-18 Released: 2003-12-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.242 (Depositor)
- R-Value Work: 0.186 (Depositor)
- R-Value Observed: 0.186 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
| 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TYROSINE PHENOL-LYASE | 456 | Pantoea agglomerans pv. gypsophilae | Mutation(s): 0 EC: 4.1.99.2 |  | |
UniProt | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P31011 | ||||
Sequence AnnotationsExpand | |||||
Reference Sequence | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Download:Ideal Coordinates CCD File | E [auth A], F [auth B], G [auth C], H [auth D] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.242 (Depositor)
- R-Value Work: 0.186 (Depositor)
- R-Value Observed: 0.186 (Depositor)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 163.49 | α = 90 |
| b = 113.04 | β = 90 |
| c = 101.09 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SAINT | data scaling |
| SAINT | data reduction |
| X-PLOR | model building |
| X-PLOR | refinement |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 2003-12-09 Deposition Author(s): Mikami, B., Yamamoto, Y., Katayama, T., Suzuki, H.
Revision History (Full details and data files)
- Version 1.0: 2003-12-09
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2018-04-04
Changes: Data collection - Version 1.4: 2023-08-09
Changes: Data collection, Database references, Derived calculations, Refinement description
