1C7G

TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA

• PDB DOI: https://doi.org/10.2210/pdb1C7G/pdb

• Classification: LYASE
• Organism(s): Pantoea agglomerans pv. gypsophilae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2000-02-18 Released: 2003-12-09 
• Deposition Author(s): Mikami, B., Yamamoto, Y., Katayama, T., Suzuki, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.242 
• R-Value Work: 0.186 
• R-Value Observed: 0.186 

Literature

The Structure of Tyrosine Phenol-Lyase from Erwinia Herbicola

Mikami, B., Yamamoto, Y., Katayama, T., Suzuki, H., Kumagai, H.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 206.71 kDa 
• Atom Count: 14,905 
• Modelled Residue Count: 1,824 
• Deposited Residue Count: 1,824 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TYROSINE PHENOL-LYASE	A, B, C, D	456	Pantoea agglomerans pv. gypsophilae	Mutation(s): 0  EC: 4.1.99.2
UniProt
Find proteins for P31011 (Enterobacter agglomerans) Explore P31011  Go to UniProtKB:  P31011

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PLP	E [auth A], F [auth B], G [auth C], H [auth D]	PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.242 
• R-Value Work: 0.186 
• R-Value Observed: 0.186 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 163.49	α = 90
b = 113.04	β = 90
c = 101.09	γ = 90

Software Package:

Software Name	Purpose
SAINT	data scaling
SAINT	data reduction
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-12-09 
Deposition Author(s): Mikami, B., Yamamoto, Y., Katayama, T., Suzuki, H.

Revision History  

• Version 1.0: 2003-12-09
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 1.3: 2018-04-04
  Changes: Data collection
• Version 1.4: 2023-08-09
  Changes: Data collection, Database references, Derived calculations, Refinement description