1C5F

CRYSTAL STRUCTURE OF THE CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI COMPLEXED WITH CYCLOSPORIN A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.

Ellis, P.J.Carlow, C.K.Ma, D.Kuhn, P.

(2000) Biochemistry 39: 592

  • DOI: 10.1021/bi991730q
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The resistance of the human parasite Brugia malayi to the antiparasitic activity of cyclosporin A (CsA) may arise from the presence of cyclophilins with relatively low affinity for the drug. The structure of the complex of B. malayi cyclophilin (BmCY ...

    The resistance of the human parasite Brugia malayi to the antiparasitic activity of cyclosporin A (CsA) may arise from the presence of cyclophilins with relatively low affinity for the drug. The structure of the complex of B. malayi cyclophilin (BmCYP-1) and CsA, with eight independent copies in the asymmetric unit, has been determined at a resolution of 2.7 A. The low affinity of BmCYP-1 for CsA arises from incomplete preorganization of the binding site so that the formation of a hydrogen bond between His132 of BmCYP-1 and N-methylleucine 9 of CsA is associated with a shift in the backbone of approximately 1 A in this region.


    Organizational Affiliation

    Stanford Synchrotron Radiation Laboratory, SLAC, P.O. Box 4249, Bin 69, Stanford University, Stanford, California 94309, USA.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1A, C, E, G, I, K, M, O177Brugia malayiMutation(s): 0 
Gene Names: BMCYP-1CYP-1
EC: 5.2.1.8
Find proteins for Q27450 (Brugia malayi)
Explore Q27450 
Go to UniProtKB:  Q27450
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CYCLOSPORIN AB, D, F, H, J, L, N, P11Tolypocladium inflatumMutation(s): 0 
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000142
Query on PRD_000142
B, D, F, H, J, L, N, PCyclosporin AC /  Immunosuppressant

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Modified Residues  5 Unique
IDChainsTypeFormula2D DiagramParent
ABA
Query on ABA
B,D,F,H,J,L,N,PL-PEPTIDE LINKINGC4 H9 N O2ALA
BMT
Query on BMT
B,D,F,H,J,L,N,PL-PEPTIDE LINKINGC10 H19 N O3THR
MLE
Query on MLE
B,D,F,H,J,L,N,PL-PEPTIDE LINKINGC7 H15 N O2LEU
MVA
Query on MVA
B,D,F,H,J,L,N,PL-PEPTIDE LINKINGC6 H13 N O2VAL
SAR
Query on SAR
B,D,F,H,J,L,N,PPEPTIDE LINKINGC3 H7 N O2GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62α = 90
b = 100.16β = 93.75
c = 133.92γ = 90
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
MAR345data collection
MOSFLMdata reduction
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-12-03
    Type: Initial release
  • Version 1.1: 2011-06-14
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-07-27
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • Version 1.4: 2012-12-12
    Changes: Other
  • Version 1.5: 2017-10-04
    Changes: Advisory, Refinement description