1C47

BINDING DRIVEN STRUCTURAL CHANGES IN CRYSTALINE PHOSPHOGLUCOMUTASE ASSOCIATED WITH CHEMICAL REACTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Binding Driven Structural Changes in Crystaline Phosphoglucomutase Associated with Chemical Reaction

Baranidharan, S.Ray Jr., W.J.Liu, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASEA, B561Oryctolagus cuniculusMutation(s): 0 
Gene Names: PGM1
EC: 2.7.5.1 (PDB Primary Data), 5.4.2.2 (UniProt)
UniProt
Find proteins for P00949 (Oryctolagus cuniculus)
Explore P00949 
Go to UniProtKB:  P00949
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G16 (Subject of Investigation/LOI)
Query on G16

Download Ideal Coordinates CCD File 
C [auth A]1,6-di-O-phosphono-alpha-D-glucopyranose
C6 H13 O12 P2
RWHOZGRAXYWRNX-VFUOTHLCSA-M
 Ligand Interaction
CD
Query on CD

Download Ideal Coordinates CCD File 
D [auth A], E [auth B]CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.183 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 174.42α = 90
b = 174.42β = 90
c = 101.1γ = 90
Software Package:
Software NamePurpose
Omodel building
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-08-13
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary