Biological Assembly 1  

 3D View: Structure | Electron Density

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 43.14 kDa 
• Atom Count: 2966 
• Residue Count: 305 
• Unique protein chains: 2
• Unique nucleic acid chains: 2

1AWC

MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA

• DOI: 10.2210/pdb1AWC/pdb
• NDB: PDT048

• Classification: TRANSCRIPTION/DNA
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1997-10-01 Released: 1998-03-18 
• Deposition Author(s): Batchelor, A.H., Wolberger, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.282 
• R-Value Work: 0.211 

Literature

The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA.

Batchelor, A.H., Piper, D.E., de la Brousse, F.C., McKnight, S.L., Wolberger, C.

(1998) Science 279: 1037-1041

• PubMed: 9461436 
• DOI: 10.1126/science.279.5353.1037
• Structures With Same Primary Citation


• PubMed Abstract: 
  

GA-binding protein (GABP) is a transcriptional regulator composed of two structurally dissimilar subunits. The alpha subunit contains a DNA-binding domain that is a member of the ETS family, whereas the beta subunit contains a series of ankyrin repeats. The crystal structure of a ternary complex containing a GABPalpha/beta ETS domain-ankyrin repeat heterodimer bound to DNA was determined at 2. 15 angstrom resolution. The structure shows how an ETS domain protein can recruit a partner protein using both the ETS domain and a carboxyl-terminal extension and provides a view of an extensive protein-protein interface formed by a set of ankyrin repeats. The structure also reveals how the GABPalpha ETS domain binds to its core GGA DNA-recognition motif.

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Organizational Affiliation: 

Department of Biophysics and Biophysical Chemistry and the Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Macromolecules

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
PROTEIN (GA BINDING PROTEIN ALPHA)	A	110	Mus musculus	Mutation(s): 0  Gene Names: GABP ALPHA, Gabpa, E4tf1a
Find proteins for Q00422 (Mus musculus) Explore Q00422  Go to UniProtKB:  Q00422
NIH Common Fund Data Resources
IMPC  MGI:95610

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
PROTEIN (GA BINDING PROTEIN BETA 1)	B	153	Mus musculus	Mutation(s): 0  Gene Names: GABP BETA 1, Gabpb1, Gabpb, Gabpb2
Find proteins for Q00420 (Mus musculus) Explore Q00420  Go to UniProtKB:  Q00420

Entity ID: 1
Molecule	Chains	Length	Organism
DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3')	D	21	N/A

Entity ID: 2
Molecule	Chains	Length	Organism
DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3')	E	21	N/A

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.282 
• R-Value Work: 0.211 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 201.6	α = 90
b = 34.55	β = 99.83
c = 59.26	γ = 90

Software Package:

Software Name	Purpose
MLPHARE	phasing
X-PLOR	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1997-10-01 
• Released Date: 1998-03-18 
Deposition Author(s): Batchelor, A.H., Wolberger, C.

Revision History 

• Version 1.0: 1998-03-18
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance