Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 43137.98 
• Atom Count: 2920 
• Residue Count: 305 
• Unique protein chains: 2
• Unique nucleic acid chains: 2

1AWC

MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA

• DOI: 10.2210/pdb1AWC/pdb
• NDB: PDT048

• Classification: TRANSCRIPTION/DNA
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 1997-10-01 Released: 1998-03-18 
• Deposition Author(s): Batchelor, A.H., Wolberger, C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.282 
• R-Value Work: 0.211 

Literature

The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA.

Batchelor, A.H., Piper, D.E., de la Brousse, F.C., McKnight, S.L., Wolberger, C.

(1998) Science 279: 1037-1041

• PubMed: 9461436 


• PubMed Abstract: 
  

GA-binding protein (GABP) is a transcriptional regulator composed of two structurally dissimilar subunits. The alpha subunit contains a DNA-binding domain that is a member of the ETS family, whereas the beta subunit contains a series of ankyrin repeats. The crystal structure of a ternary complex containing a GABPalpha/beta ETS domain-ankyrin repeat heterodimer bound to DNA was determined at 2. 15 angstrom resolution. The structure shows how an ETS domain protein can recruit a partner protein using both the ETS domain and a carboxyl-terminal extension and provides a view of an extensive protein-protein interface formed by a set of ankyrin repeats. The structure also reveals how the GABPalpha ETS domain binds to its core GGA DNA-recognition motif.

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Organizational Affiliation: 

Department of Biophysics and Biophysical Chemistry and the Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
PROTEIN (GA BINDING PROTEIN ALPHA)	A	110	Mus musculus	Mutation(s): 0  Gene Names: Gabpa (E4tf1a)
Find proteins for Q00422 (Mus musculus) Go to UniProtKB:  Q00422

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
PROTEIN (GA BINDING PROTEIN BETA 1)	B	153	Mus musculus	Mutation(s): 0  Gene Names: Gabpb1 (Gabpb, Gabpb2)
Find proteins for Q00420 (Mus musculus) Go to UniProtKB:  Q00420

Entity ID: 1
Molecule	Chains	Length	Organism
DNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3')	D	21	N/A

Entity ID: 2
Molecule	Chains	Length	Organism
DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3')	E	21	N/A

Small Molecules

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
BRU	D, E	DNA LINKING	C9 H12 Br N2 O8 P		DU
CBR	D	DNA LINKING	C9 H13 Br N3 O7 P		DC

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.15 Å
• R-Value Free: 0.282 
• R-Value Work: 0.211 
• Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 201.600	α = 90.00
b = 34.550	β = 99.83
c = 59.260	γ = 90.00

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
X-PLOR	refinement
MLPHARE	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1997-10-01 
• Released Date: 1998-03-18 
• Deposition Author(s): Batchelor, A.H., Wolberger, C.

Revision History 

• Version 1.0: 1998-03-18
  Type: Initial release
• Version 1.1: 2008-05-22
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance