1AVY

FIBRITIN DELETION MUTANT M (BACTERIOPHAGE T4)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.220 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of bacteriophage T4 fibritin M: a troublesome packing arrangement.

Strelkov, S.V.Tao, Y.Shneider, M.M.Mesyanzhinov, V.V.Rossmann, M.G.

(1998) Acta Crystallogr.,Sect.D 54: 805-816

  • Also Cited By: 1V1I, 1V1H

  • PubMed Abstract: 
  • Fibritin, a 52 kDa product of bacteriophage T4 gene wac, forms 530 A long fibers, named whiskers, that attach to the phage neck and perform a helper function during phage assembly. Fibritin is a homotrimer, with its predominant central domain consist ...

    Fibritin, a 52 kDa product of bacteriophage T4 gene wac, forms 530 A long fibers, named whiskers, that attach to the phage neck and perform a helper function during phage assembly. Fibritin is a homotrimer, with its predominant central domain consisting of 12 consecutive alpha-helical coiled-coil segments linked together by loops. The central domain is flanked by small globular domains at both ends. Fibritin M is a genetically engineered fragment of the wild type and contains 74 amino-acid residues corresponding to the last coiled-coil segment and the complete carboxy-terminal domain. The crystals of fibritin M belong to the rare space group P3 with three crystallographically independent trimers in the unit cell. The structure has been established at 1.85 A resolution by combining molecular and isomorphous replacement techniques. One of the two heavy-atom derivatives used was gaseous xenon. A substantial fraction of residues in each independent trimer is disordered to various extents in proportion to the lack of restraints on the molecules provided by the lattice contacts. Accurate modeling of the solvent present in the crystals was crucial for achieving good agreement with experimental data.


    Related Citations: 
    • Fibritin Encoded by Bacteriophage T4 Gene Wac Has a Parallel Triple-Stranded Alpha-Helical Coiled-Coil Structure
      Efimov, V.P.,Nepluev, I.V.,Sobolev, B.N.,Zurabishvili, T.G.,Schulthess, T.,Lustig, A.,Engel, J.,Haener, M.,Aebi, U.,Venyaminov, S.Yu.,Potekhin, S.A.,Mesyanzhinov, V.V.
      (1994) J.Mol.Biol. 242: 470
    • Preliminary Crystallographic Studies of Bacteriophage T4 Fibritin Confirm a Trimeric Coiled-Coil Structure
      Strelkov, S.V.,Tao, Y.,Rossmann, M.G.,Kurochkina, L.P.,Shneider, M.M.,Mesyanzhinov, V.V.
      (1996) Virology 219: 190
    • Structure of Bacteriophage T4 Fibritin: A Segmented Coiled Coil and the Role of the C-Terminal Domain
      Tao, Y.,Strelkov, S.V.,Mesyanzhinov, V.V.,Rossmann, M.G.
      (1997) Structure 5: 789


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FIBRITIN
A, B, C
74Enterobacteria phage T4Mutation(s): 4 
Gene Names: wac
Find proteins for P10104 (Enterobacteria phage T4)
Go to UniProtKB:  P10104
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.220 
  • Space Group: P 3
Unit Cell:
Length (Å)Angle (°)
a = 43.680α = 90.00
b = 43.680β = 90.00
c = 90.610γ = 120.00
Software Package:
Software NamePurpose
X-PLORrefinement
DENZOdata reduction
X-PLORphasing
SCALEPACKdata scaling
X-PLORmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-12-03
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2011-11-16
    Type: Atomic model