1APM

2.0 ANGSTROM REFINED CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF CAMP-DEPENDENT PROTEIN KINASE COMPLEXED WITH A PEPTIDE INHIBITOR AND DETERGENT

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history. 

Literature

2.0 A refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with a peptide inhibitor and detergent.

Knighton, D.R., Bell, S.M., Zheng, J., Ten Eyck, L.F., Xuong, N.H., Taylor, S.S., Sowadski, J.M.

(1993) Acta Crystallogr.,Sect.D 49: 357-361

  • DOI: 10.1107/S0907444993000502

  • PubMed Abstract: 

    • . A mutant (Serl39Ala) of the mouse recombinant catalytic (C) subunit of cAMP-dependent protein kinase was co-crystallized with a peptide inhibitor, PKI(5-24), and MEGA-8 (octanoyl-N-methylglucamide) detergent. This structure was refined using all ob ...

    . A mutant (Serl39Ala) of the mouse recombinant catalytic (C) subunit of cAMP-dependent protein kinase was co-crystallized with a peptide inhibitor, PKI(5-24), and MEGA-8 (octanoyl-N-methylglucamide) detergent. This structure was refined using all observed data (30 248 reflections) between 30 and 1.95 A resolution to an R factor of 0.186. R.m.s. deviations of bond lengths and bond angles are 0.013 A and 2.3 degrees, respectively. The final model has 3075 atoms (207 solvent) with a mean B factor of 31.9 A(2). The placement of invariant protein-kinase residues and most C:PKI(5-24) interactions were confirmed, but register errors affecting residues 55-64 and 309-339 were corrected during refinement by shifting the affected sequences toward the C terminus along the previously determined backbone path. New details of C:PKI(5-24) interactions and the Ser338 autophosphorylation site are described, and the acyl group binding site near the catalytic subunit NH(2) terminus is identified.

    Related Citations: 
    • Structure of a Peptide Inhibitor Bound to the Catalytic Subunit of Cyclic Adenosine Monophosphate-Dependent Protein Kinase
      Knighton, D.R.,Zheng, J.,Teneyck, L.F.,Xuong, N.-H.,Taylor, S.S.,Sowadski, J.M.
      (1991) Science 253: 414
    • Crystal Structure of the Catalytic Subunit of Cyclic Adenosine Monophosphate-Dependent Protein Kinase
      Knighton, D.R.,Zheng, J.,Teneyck, L.F.,Ashford, V.A.,Xuong, N.-H.,Taylor, S.S.,Sowadski, J.M.
      (1991) Science 253: 407
    • Expression of the Catalytic Subunit of C/AMP-Dependent Protein Kinase in Escherichia Coli
      Slice, L.W.,Taylor, S.S.
      (1989) J.Biol.Chem. 264: 20940
    • Crystal Structure of the Catalytic Subunit of cAMP-Dependent Protein Kinase Complexed with Mg/ATP and Peptide Inhibitor
      Zheng, J.,Knighton, D.R.,Teneyck, L.F.,Karlsson, R.,Xuong, N.-H.,Taylor, S.S.,Sowadski, J.M.
      (1993) Biochemistry 32: 2154

    Organizational Affiliation: 

    Department of Chemistry, University of California, San Diego, La Jolla 92093-0654, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
cAMP-DEPENDENT PROTEIN KINASE
E
350Mus musculusMutation(s): 1 
Gene Names: Prkaca (Pkaca)
EC: 2.7.11.11
Find proteins for P05132 (Mus musculus)
Go to UniProtKB:  P05132
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PEPTIDE INHIBITOR PKI(5-24)
I
20Mus musculusMutation(s): 0 
Gene Names: Pkia
Find proteins for P63248 (Mus musculus)
Go to UniProtKB:  P63248
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OCT
Query on OCT
Download SDF File 
Download CCD File 
E
N-OCTANE
C8 H18
TVMXDCGIABBOFY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
E
L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
E
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Work: 0.186 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 73.840α = 90.00
b = 75.760β = 90.00
c = 81.010γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
X-PLORphasing
X-PLORmodel building
TNTrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1993-04-15
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2019-07-17
    Type: Data collection, Derived calculations, Other, Refinement description
  • Version 1.4: 2019-08-14
    Type: Data collection, Refinement description